rs33236307 SNP Detail

Summary

• ID
  rs33236307
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:3646213 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGAGTTAA TGTACCGCGG
  CCTGGCCTTG AGCTTTCAGC AGTTTTTCTG CCTCAGCTTC CCAAGTGCTG AATGTACAGG
  TGTTGCCTGC CACACCTAGC TGGTTCCCCC AGCCCCCCAG TAAGTTTATT ATAGTATGCA
  TGTGAGGAGA CTGCTTCCTC TGCTGCATGT GTGGGGGTTA GCGGCTAACA CGGTGGAGTT
  R
  GGTTTTTCTT CCCACCTTCA CGTGGGTTCT GGAGGCTGAC CTTTGGGTTG TTACTTAACA
  GCAAGCACCT TTTCCCACTT ATCCATCCTC TGCCCCCCCC TTCATATTTT ATTTGTGTGT
  GTGTTGAGGG GGCTATTCAG GCTACGGTGT ATATATGAAG GTCAGAGGGT AACTTGTTGG
  GGTTGGTTCT TTCCTTCCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46250645	mCV22853539	ABI	CRAMUS_MOUSE	f	SNP	A	G	G					G
ss61076731	NES16055162	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G	G		A	G	G	G	G	G	A	A
ss148546603	ENSMUSSNP5492955	ENSEMBL	ENSEMBL_Sanger	f	SNP			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33236307					SNP	A	G	G	G	G	G	G	G	A	G	G	G	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61076731	NES16055162	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:3646213 () rs orientation: forward

Symbol	Name	Function Class
Camsap3	calmodulin regulated spectrin-associated protein family, member 3	within coordinates
Rr180906	regulatory region 180906	13 bp distal
Rr381636	regulatory region 381636	1210 bp upstream
Tssr76064	transcription start site region 76064	307 bp upstream