rs33236890 SNP Detail

Summary

• ID
  rs33236890
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:126776144 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAAGGGAGG TAAAAATAGG
  GCACCAGGAA GAGAAAAAAA AAAAAAAAAA AAAAAAAAAA ACACCAGCCC TAGCTGAGTA
  TAACTGACTA TTACCTTCTG TGCAAGTTAA TTTCAGCTAG GCAAAGAGGA AGGAAGCATT
  AGTCTGAAAG CCAAGGGAGG CAACTACAGA ACTACAGAAC TACAGAACTG GACCTTGGCT
  R
  AAGTTAGGAG AGGGGGAGAG TGAGAAGAGG CAGAGGGTGA AATAGTTGCA CAGCTTGGAA
  CTTGAGACTT CCTCATTGGC ATCTTCCTGG GGGAATTCCT GAAGGAAGCT CTCCCACAGT
  TCTGCGTGGG TTTTTTCTGT AGTTGTCTGT CCCCTGGCTT CCCCCTCTGG TCCAGTTTCA
  ATCTATTTGT AACCCTACCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss45253736	mCV22628472	ABI	CRAMUS_MOUSE	f	SNP	G	A
ss320498580	CHEV_2_126759960	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs33236890					SNP	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:126776144 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12210	CpG island 12210	820 bp distal
Gm75308	predicted gene, 75308	within coordinates
Rr564422	regulatory region 564422	1137 bp distal
Rr564423	regulatory region 564423	1148 bp distal
Rr564424	regulatory region 564424	1000 bp distal
Rr564425	regulatory region 564425	499 bp distal
Sppl2a	signal peptide peptidase like 2A	989 bp upstream
Tssr26085	transcription start site region 26085	1134 bp upstream
Tssr26086	transcription start site region 26086	1091 bp upstream
Tssr26087	transcription start site region 26087	1060 bp upstream
Tssr26088	transcription start site region 26088	997 bp upstream
Tssr26089	transcription start site region 26089	983 bp upstream
Tssr26090	transcription start site region 26090	344 bp upstream