rs33237286 SNP Detail

Summary

• ID
  rs33237286
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:106521480 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGATCTGT AGAGTTTAAG
  GCTCGCCTGG TCCACATAAT GAGCTCCAGG TCAACCAAGG GCTACAATGA GAGTAGAAGA
  GACCTTGTCT CAACACCCCC ACACACCTCC CCCCCCAAAA AAACCTACCA CTACCACCAA
  CAACAAAAAA ACAAAGACAA ACAAAAAAAG AAAGCCTACA TCTAGACAAA ATAAGTTGCG
  Y
  GCACACACAA TAATAATTAA CAACAAAAAG ACATGTGCTG GAAATGCAGC TCAGTTGGTA
  GCACACTGCC TTGCCTAGCA CTCATAGACC CCCTGAATAA GAACAAGGCA TAATGATGCA
  CACCTGGAAT TCTAGGCCCT GGAGGTGGAG GCAGGGGGGG TCAGAAGTTT CATGTGATGC
  TCAGCTACAT AGTAAGTTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47774026	NES11270905	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33237286					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47774026	NES11270905	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:106521480 () rs orientation: forward

Symbol	Name	Function Class
Gm28111	predicted gene 28111	712 bp downstream
Grm2	glutamate receptor, metabotropic 2	253 bp downstream
Rr686373	regulatory region 686373	765 bp distal
Rr686374	regulatory region 686374	888 bp distal
Rr686375	regulatory region 686375	276 bp distal
Rr686376	regulatory region 686376	1569 bp proximal