rs33237290 SNP Detail

Summary

• ID
  rs33237290
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:106522754 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACGCACATCG TAGTGGTCTG CACCTGTGAG GGATGCACGT
  GCACGGGTCA AGGAAGGTCA AGGTAGGTCA GGAGGACATT CCACATGCCT GGGCCTATGA
  Y
  CCCTGCCTAG GCGGAGGCAG AGAAGGATGG TAGTATCGAC TGAACAGTCC TTTGGCCAAG
  CCTCAAAGAA GGACCACAAT GGCGGTGTCA GCCCTAGTTA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss47774030	NES11270884	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs33237290					SNP	T	T	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47774030	NES11270884	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:106522754 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22271	CpG island 22271	1540 bp proximal
Gm28111	predicted gene 28111	1986 bp downstream
Grm2	glutamate receptor, metabotropic 2	within coordinates
Rr686375	regulatory region 686375	1550 bp distal
Rr686376	regulatory region 686376	295 bp proximal