rs33238164 SNP Detail

Summary

• ID
  rs33238164
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:106522955 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTGCCTAG GCGGAGGCAG
  AGAAGGATGG TAGTATCGAC TGAACAGTCC TTTGGCCAAG CCTCAAAGAA GGACCACAAT
  GGCGGTGTCA GCCCTAGTTA ATCATTTTCG GAGGCACACC AAGATCCCAG CCATGTTATG
  AACATGAAAT GGTATGTGTA TGCATAGGGG TGCATGCACA CATAGGGGTG CGTGCATAGG
  Y
  GTGCAAGGGG TGCAAGTATG GAGTATATTT GTGTAGATGC AAGCATAACA GCATGGGCAT
  ATTGTGTGGT AGTGACTCTG CAGAGGAGAA TGCGAAAGTG TTTGTGGGTG GGGAGGGCTC
  TATGTGTGGG CAAGATGTGT GTATGCTCTA GATGTGCCAG GATGTGTGCG CACACTTGTA
  GGTGCATAAG GGAAAGTATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss47774034	NES11270888	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33238164					SNP	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47774034	NES11270888	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:106522955 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22271	CpG island 22271	1339 bp proximal
Grm2	glutamate receptor, metabotropic 2	within coordinates
Rr686375	regulatory region 686375	1751 bp distal
Rr686376	regulatory region 686376	94 bp proximal