rs33238170 SNP Detail

Summary

• ID
  rs33238170
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:106526975 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACTTTGGT ACCTATGCGG
  GTCCTAGAAG CCGCCTCTAC TACCAGAATT CGGAGGACAG CTGTCCTCTT GGTCTAAGTC
  TGACCCTATG ATTCTGTGCT CTGTCAGCCC TGGCAGTGTC TCCCACTGCA CACACAAAGA
  CTTTCTGAAC CCGAGCACTG CAGTTCTGAG GCTGTTGCTC TTCTTAACGG GTACTTTAAT
  Y
  TTTGCTCCCG AGAACACTTT GGCTACTTTG GGTAGAAAAA TTAAGATGAG GACAAGTATA
  GCTGTGCACA ATATAGTTCC AGCACTCGGG AGGCTGAGGC AGGAGGATTG CTATGAGTTT
  GGGGCTACAC AATGAGTTGG AGGCAAGCCT AGGCTACATA GCATGGCCTA AACAGATTTT
  TGTTTGTTTG TTTTTGTTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47774045	NES11270678	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33238170					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47774045	NES11270678	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:106526975 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22271	CpG island 22271	1564 bp distal
Cpgi22272	CpG island 22272	646 bp proximal
Grm2	glutamate receptor, metabotropic 2	within coordinates