rs33238171 SNP Detail

Summary

• ID
  rs33238171
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:106527375 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTGTTTGT TTTTTGTTTT
  TTGTTTTTTT TTGTTTTGTT TTTATCAAAA TTAATAATAG AAGTTTCACC TAAATAGAAG
  TTCTCCCTAT GGTTCACCCT CAACCTCCTC TGACTGGGAC TCTCACTCTG CCTGTGAATT
  GCTTGGGTTC CCCAAGCGAG ATAAAGAACC AACAGCCAGA AGGTAATGTT CAAGCAATAG
  W
  CAGAGTTCCT AGAATCAGGA CCAGTCCAGA TTCCACTTTC TGGAAGATTC TCAGAAAGTA
  GAACCTCAGC CCTGACTCCA GCTGGGGTCC TCTGCTTATG GTCCCTGTGT CCTAAGTGAC
  ACAGTCCCTG ACTACGTCTT TGTGTTCCAC CCTGTTTTCT TAGCCAAGTG ATGGAACCTG
  AAAGCCTGCA GGCCAACGGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47774047	NES11270654	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	A	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33238171					SNP	T	T	T	T	T	A	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47774047	NES11270654	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:106527375 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22271	CpG island 22271	1964 bp distal
Cpgi22272	CpG island 22272	246 bp proximal
Grm2	glutamate receptor, metabotropic 2	within coordinates