rs33238589 SNP Detail

Summary

• ID
  rs33238589
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:157121475 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCCCCTACGG GGCAGGGGCA TGGGCACGGG CGCTTTCGGG
  GTCGAGCGTG TGGCGGAGGC TGCGAGCTGG TGAAGTGCTG GGGACCCGAA GGGTTGGTGG
  Y
  GGGGCGTGCG ACGTGGGACT ACGGGTCCCC GCAAGGCCGA GCGCGAGCCC GGGCAGCGCG
  GAGCCCGAGC CTGGCCTCCT CCATTCATTC GAGTAGTAC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45254290	mCV22672010	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
ss148095651	ENSMUSSNP4225096	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		T
ss320585269	CHEV_2_157105291	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33238589					SNP	C	C	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:157121475 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12571	CpG island 12571	within coordinates
Mroh8	maestro heat-like repeat family member 8	6 bp upstream
Rpn2	ribophorin II	within coordinates
Rr397441	regulatory region 397441	506 bp downstream
Rr568459	regulatory region 568459	399 bp distal
Rr568460	regulatory region 568460	within coordinates
Tssr21228	transcription start site region 21228	530 bp downstream
Tssr21229	transcription start site region 21229	491 bp downstream
Tssr21230	transcription start site region 21230	425 bp downstream
Tssr21231	transcription start site region 21231	238 bp downstream
Tssr27165	transcription start site region 27165	37 bp upstream
Tssr27166	transcription start site region 27166	within coordinates
Tssr27167	transcription start site region 27167	1 bp downstream