rs33238785 SNP Detail

Summary

• ID
  rs33238785
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:11261697 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCAGCACT CAGGGGGCTG
  AGCCATGAGG ATTGCTAAAG GCTTGAGGTC AGCCTGGGAC AGACAGCAAG ACCTAGTCTC
  AAAAAAAAAA AAAAAAAAAA AAAAAACAGG GAAAACCTGG TCTCAAAATT CACTGCATTT
  TTAACTTAAA GATAACATTA TCTCTTGCTG AGGCCATGTC AGCATCTGAA TATGGAAGCT
  Y
  GGAGCTCAGG CAGCCTTTGG GACAGTATCC CCTCAACAAC AAGGCTGTCA GGCCTCATGG
  TCTTACCTTG AAATCCTGGA ACTCCGGGCA GTCCCATATC TCCCTTTGAA CCTGTGATCC
  CTGGAGAGCC GCCAATGCCC TAGGTACCAA AGGAAGTGTG AGCTGGACAT GGCTCTAGAC
  ACCCAGTTTG TACCCTGCGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46250772	mCV23753063	ABI	CRAMUS_MOUSE	f	SNP	C	T					T		T
ss51941293	NES14959985	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	T	T		C	T	T	T	C	T	C	C	C
ss148666898	ENSMUSSNP3904635	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33238785					SNP	C	T	T	T	T	T	T	C	T	T	T	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51941293	NES14959985	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:11261697 () rs orientation: forward

Symbol	Name	Function Class
Col4a1	collagen, type IV, alpha 1	within coordinates
Tssr80369	transcription start site region 80369	120 bp upstream