rs33239625 SNP Detail

Summary

• ID
  rs33239625
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:39907478 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TCTTGTGTAA AACCTTATAG ACATTCTAAT GGATAGAAAA GCTATACATT GTAAATGAGC
  TTGAAATTAT CCTTATTTAT CCATTTCAGA TTACATGTGT TATTTTTAGA ATTTTCAATG
  CAACAGGTAT GAATGAACTT TGGCAAAAAT TTCTCTTTTA AAGAGTACTG AAGAAGGAGT
  AGATCTAGGG AAAAGGGAGG GGAGGGGAGG GACTAGGAGG AGTGGAGGGA GGGAAAACTA
  TGGTTGGATG GAATATAAGA GAAAGATTTG CATTTCCCTG ATGATTAAGG GTGTTGAAAT
  W
  TTTTTCAGGT GCTTCTCAGC CATTCAATAT TCCTCAGTTG ACAATTCTTT GTTTAGCTCT
  GTGCCCCATT TTTTAATGGG GTTATTTGGT TTTCTGGAGT CCATCTTCTT TAGTTCTTTA
  TATATATTTT ATATTAGTAC CCTATCTGAT TTAGGATTGG TAAAGATCCT TTCCCAATCT
  GTTGGTGGCC TGAGACTGCC CCACCTGGGT GTCCATCCGA TAATCAGCCA CCAAACCCAG
  ACACTATTGC ATAGGCCAGC AAGATTTTGC TGAAAGGACC CTGATATAGC TGTCTCTTGT
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46251070	mCV24746255	ABI	CRAMUS_MOUSE	f	SNP	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33239625					SNP	T	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:39907478 () rs orientation: forward

Symbol	Name	Function Class
Gm5609	predicted gene 5609	1473 bp upstream
Rr1558	regulatory region 1558	794 bp proximal