rs33240424 SNP Detail

Summary

• ID
  rs33240424
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:123128310 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGTA GCAGATCCCC AATGTTCCTC
  S
  GTCTTTTAAG TAGTGCTTGT GACTG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45754923	mCV24884198	ABI	CRAMUS_MOUSE	f	SNP	G	G	G					C		C
ss51195111	NES13813432	PERLEGEN	MM_PANEL2	f	SNP	G		G	C	G	C	C		G	C	C	C		C	C	G	C		G
ss149192215	ENSMUSSNP1790686	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G							C
ss321670136	CHEV_5_123440256	CHEVERUD	SCREENING_POP	f	SNP													G					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33240424					SNP	G	G	G	C	G	C	C	C	G	C	C	C	G	C	C	G	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51195111	NES13813432	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:123128310 () rs orientation: forward

Symbol	Name	Function Class
A930024E05Rik	RIKEN cDNA A930024E05 gene	within coordinates
Cpgi16565	CpG island 16565	1518 bp distal
Cpgi16566	CpG island 16566	714 bp distal
Gm44574	predicted gene 44574	within coordinates
Gm73435	predicted gene, 73435	559 bp upstream
Kdm2b	lysine (K)-specific demethylase 2B	977 bp upstream
Rr620030	regulatory region 620030	1725 bp distal
Rr620031	regulatory region 620031	1224 bp distal
Rr620032	regulatory region 620032	1099 bp distal
Rr620033	regulatory region 620033	952 bp distal
Rr620034	regulatory region 620034	451 bp distal
Rr620035	regulatory region 620035	306 bp distal
Rr620036	regulatory region 620036	69 bp proximal
Rr620037	regulatory region 620037	570 bp proximal
Tssr48730	transcription start site region 48730	995 bp downstream
Tssr48731	transcription start site region 48731	966 bp downstream
Tssr48732	transcription start site region 48732	932 bp downstream
Tssr48733	transcription start site region 48733	881 bp downstream
Tssr48734	transcription start site region 48734	635 bp downstream
Tssr48735	transcription start site region 48735	508 bp downstream
Tssr48736	transcription start site region 48736	485 bp downstream
Tssr48737	transcription start site region 48737	304 bp downstream
Tssr48738	transcription start site region 48738	511 bp upstream
Tssr48739	transcription start site region 48739	528 bp upstream
Tssr48740	transcription start site region 48740	543 bp upstream
Tssr48741	transcription start site region 48741	608 bp upstream
Tssr53169	transcription start site region 53169	1721 bp upstream
Tssr53170	transcription start site region 53170	1542 bp upstream
Tssr53171	transcription start site region 53171	1167 bp upstream
Tssr53172	transcription start site region 53172	1136 bp upstream
Tssr53173	transcription start site region 53173	967 bp upstream
Tssr53174	transcription start site region 53174	909 bp upstream
Tssr53175	transcription start site region 53175	38 bp downstream
Tssr53176	transcription start site region 53176	157 bp downstream
Tssr53177	transcription start site region 53177	213 bp downstream
Tssr53178	transcription start site region 53178	230 bp downstream
Tssr53179	transcription start site region 53179	271 bp downstream
Tssr53180	transcription start site region 53180	286 bp downstream