rs33240628 SNP Detail

Summary

• ID
  rs33240628
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:6182841 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGCAGCGAG GAGATGGTCC CGGAGGCTGC GACTGGAGAG
  ACTTGTAAAG GCGGCTGGAA GCGAGTACAG TGGGAATCCC CGGGTCTGTT CCGTTCAAAC
  R
  CTGTTGAAGC AAGACACAGA TCCACGGGAC CTCCAAGGCG CTGCTCCTAG TCCAGAGTTT
  ATAAATGGTA GAATGCCTAT AAAGTAACAA TAGCAATGT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss39511779	mCV22811250	ABI	CRAMUS_MOUSE	f	SNP		A	G					A
ss60525297	NES16542717	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	A	G		A	G	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33240628					SNP	A	A	G	G	G	A	G	A	A	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60525297	NES16542717	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:6182841 () rs orientation: forward

Symbol	Name	Function Class
Gm15590	predicted gene 15590	161 bp upstream
Gm55175	predicted gene, 55175	622 bp upstream
Gm66616	predicted gene, 66616	within coordinates
Rr521311	regulatory region 521311	within coordinates
Tulp4	TUB like protein 4	within coordinates