rs33240779 SNP Detail

Summary

• ID
  rs33240779
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:163835865 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATAGAAATG TAGACAGCAG
  TTTTCTGTCC ATAGAAATCT GATTTGTATG GTTCTGAGTT CTATAAGAAA GCAGGCTGAG
  CAAGGCAGCA TCTCTCCTCC ATGGCCTCTG CATCCGTTCC TACCTCCAGG TTCCTGCCCT
  GTTTGAGTTC TTGTCCTGAC TTCTTTGGTA ATGAATAATT TGGCCGTGTA AGTCAAATAA
  R
  CCCTTTCCTC CCCAGCATCA CAGCAATAGA AACCCTAGCT AAGACAGCAG CTAACTCAAA
  GTGTTTATTC ATTCTGGAAC AGTACATTGG GAGGATGGGG AGTTATATAA ATGAACTGGG
  GTGCTGATAA TGGGTAAGGA CAGAGCTCTG ATTGTCTCGC CCAGGGAACT ATTAAGTCGG
  AGCCATCAGC GATGGGTTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45254904	mCV22800592	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	A
ss148218298	ENSMUSSNP3967882	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		A
ss320604714	CHEV_2_163819681	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33240779					SNP	G	G	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163835865 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12645	CpG island 12645	738 bp proximal
Rr56027	regulatory region 56027	335 bp proximal
Rr397469	regulatory region 397469	983 bp upstream
Tssr21496	transcription start site region 21496	1193 bp upstream
Tssr21497	transcription start site region 21497	1205 bp upstream
Tssr21498	transcription start site region 21498	1290 bp upstream
Tssr21499	transcription start site region 21499	1326 bp upstream
Ywhab	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	1217 bp upstream