rs33241350 SNP Detail

Summary

• ID
  rs33241350
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:123128757 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTTTAGGT GACTGCTGTT
  TTTATCTTGT CCCAATGTCA AGAGCACTGG TTCAGACAGA TACGGGGAGG AAGTGGCCTT
  GCCACCTGAA ATCAGCTGTG AACCACACAT CGTCACCCTC CCTTACGTCA GAATTTCCTG
  CCTTATCGGT CTGTACTTTT TTTCCACCTG TCCCCAAATC TGCTCTTTGA ATTTTTTTTT
  W
  AAAATTCCAT CCATGCACGT TATCGGTAGA AATCTACGTA GAGATGAGGC GACAAACACC
  AAGTTTGTCA CCAAACTGAA ACTACATCTA CGTTGGCTCA GCTGCATTCT CTGGGCAGCC
  CTTCTAACCA TCCCTGTGAA AACCAGGGGC CAGCTGGTGC TGTAACGCAG TCCTGGGATA
  TTTGGCCTAG CAAGCCTAAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45754838	mCV24884195	ABI	CRAMUS_MOUSE	f	SNP	T	T	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33241350					SNP	T	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:123128757 () rs orientation: forward

Symbol	Name	Function Class
A930024E05Rik	RIKEN cDNA A930024E05 gene	within coordinates
Cpgi16565	CpG island 16565	1965 bp distal
Cpgi16566	CpG island 16566	1161 bp distal
Gm44574	predicted gene 44574	within coordinates
Gm73435	predicted gene, 73435	112 bp upstream
Kdm2b	lysine (K)-specific demethylase 2B	1424 bp upstream
Rr620031	regulatory region 620031	1671 bp distal
Rr620032	regulatory region 620032	1546 bp distal
Rr620033	regulatory region 620033	1399 bp distal
Rr620034	regulatory region 620034	898 bp distal
Rr620035	regulatory region 620035	753 bp distal
Rr620036	regulatory region 620036	within coordinates
Rr620037	regulatory region 620037	123 bp proximal
Tssr48730	transcription start site region 48730	1442 bp downstream
Tssr48731	transcription start site region 48731	1413 bp downstream
Tssr48732	transcription start site region 48732	1379 bp downstream
Tssr48733	transcription start site region 48733	1328 bp downstream
Tssr48734	transcription start site region 48734	1082 bp downstream
Tssr48735	transcription start site region 48735	955 bp downstream
Tssr48736	transcription start site region 48736	932 bp downstream
Tssr48737	transcription start site region 48737	751 bp downstream
Tssr48738	transcription start site region 48738	64 bp upstream
Tssr48739	transcription start site region 48739	81 bp upstream
Tssr48740	transcription start site region 48740	96 bp upstream
Tssr48741	transcription start site region 48741	161 bp upstream
Tssr53170	transcription start site region 53170	1989 bp upstream
Tssr53171	transcription start site region 53171	1614 bp upstream
Tssr53172	transcription start site region 53172	1583 bp upstream
Tssr53173	transcription start site region 53173	1414 bp upstream
Tssr53174	transcription start site region 53174	1356 bp upstream
Tssr53175	transcription start site region 53175	404 bp upstream
Tssr53176	transcription start site region 53176	287 bp upstream
Tssr53177	transcription start site region 53177	231 bp upstream
Tssr53178	transcription start site region 53178	199 bp upstream
Tssr53179	transcription start site region 53179	165 bp upstream
Tssr53180	transcription start site region 53180	121 bp upstream