rs33242480 SNP Detail

Summary

• ID
  rs33242480
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118713411 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTATG TCTGAAAAGT GGATGGGAAT
  R
  GTGGGGGTGG GACGCTGCTA ATGAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45254342	mCV22801912	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G
ss147316216	ENSMUSSNP5964361	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		G
ss320472445	CHEV_2_118708666	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33242480					SNP	G	G	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118713411 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12096	CpG island 12096	344 bp proximal
Ivd	isovaleryl coenzyme A dehydrogenase	23 bp downstream
Rr397218	regulatory region 397218	within coordinates
Rr397219	regulatory region 397219	606 bp upstream