rs33242547 SNP Detail

Summary

• ID
  rs33242547
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:121979055 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTTA AAGTAACTTA TTCACACGAT
  R
  GACTAATGGC AGTCGGAGCT GGAAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45254789	mCV24434416	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G
ss147410036	ENSMUSSNP308184	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
ss320487210	CHEV_2_121974310	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33242547					SNP	G	G	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121979055 () rs orientation: forward

Symbol	Name	Function Class
B2m	beta-2 microglobulin	Intron
Cpgi12169	CpG island 12169	330 bp distal
Patl2	protein associated with topoisomerase II homolog 2 (yeast)	Intron
Rr397252	regulatory region 397252	845 bp downstream
Rr563912	regulatory region 563912	878 bp distal
Rr563913	regulatory region 563913	within coordinates
Tssr19804	transcription start site region 19804	1080 bp downstream
Tssr19805	transcription start site region 19805	878 bp downstream
Tssr19806	transcription start site region 19806	846 bp downstream
Tssr19807	transcription start site region 19807	590 bp upstream
Tssr19808	transcription start site region 19808	643 bp upstream
Tssr19809	transcription start site region 19809	987 bp upstream
Tssr19810	transcription start site region 19810	1988 bp upstream
Tssr25953	transcription start site region 25953	1617 bp upstream
Tssr25954	transcription start site region 25954	1054 bp upstream