rs33242559 SNP Detail

Summary

• ID
  rs33242559
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:128813475 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAGTGCGA GGTGGTGGCA
  GCCCCTGCGC CCGCGAGAAG CCTGCTGCAG GGGGTGGCGT GAGGAGCCTC AGGGACTGCG
  GACCTAAGCG TGCTAAGCAC GGGGCCAGGA TAGGACTGGA CGCTGCTGGA CCACGACGAT
  CAGGGTCTGG AACCAAGCTG TGCCCACCTG TGTCTTGACC TCGACAGACC TGTACCCAGG
  M
  CCGGGCTTGG TCTCTACCTC TCTCTATGCT CGAGCTTTAC CTATCTCTGC CTGGACCTTG
  ACACCTCCTT ATTGTTCTGG GCCTATTTCC CACCTTAACC TGTTCTCAGG CTTCATCCCC
  ATCTCTCCTT GTGCCTAAGC CTGGTCCACA TCCCTTCTCC TACCTGTCCT CACTTCTCTA
  TTGTTCTTGG ACCTCTTCCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45755191	mCV23759946	ABI	CRAMUS_MOUSE	f	SNP	A	A	C					C
ss51843717	NES14705143	PERLEGEN	MM_PANEL2	f	SNP	A		C	C	C	C	C		C	C	C	A		C	C	C	C		A
ss149244951	ENSMUSSNP2103061	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	C
ss321688014	CHEV_5_129242286	CHEVERUD	SCREENING_POP	f	SNP													C					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33242559					SNP	A	A	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51843717	NES14705143	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:128813475 () rs orientation: forward

Symbol	Name	Function Class
4930553I04Rik	RIKEN cDNA 4930553I04 gene	382 bp upstream
Cpgi16665	CpG island 16665	9 bp distal
Gm71554	predicted gene, 71554	350 bp upstream
Piwil1	piwi-like RNA-mediated gene silencing 1	within coordinates
Tssr1644	transcription start site region 1644	250 bp downstream
Tssr48983	transcription start site region 48983	318 bp downstream
Tssr48984	transcription start site region 48984	279 bp downstream
Tssr48985	transcription start site region 48985	224 bp downstream
Tssr48986	transcription start site region 48986	164 bp downstream
Tssr53471	transcription start site region 53471	393 bp upstream