rs33242786 SNP Detail

Summary

• ID
  rs33242786
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:24914131 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCAG AAAACCACCT GCCACTGCTT
  S
  CCAAGTGCTG GGATTAACGG CGTGC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39511512	mCV24347734	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	G	C
ss145361456	ENSMUSSNP987687	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33242786					SNP	C	C	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:24914131 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8739	CpG island 8739	447 bp proximal
Gfer	growth factor, augmenter of liver regeneration	within coordinates
Noxo1	NADPH oxidase organizer 1	1077 bp upstream
Rr523392	regulatory region 523392	539 bp proximal
Rr523393	regulatory region 523393	901 bp proximal
Rr523394	regulatory region 523394	1362 bp proximal
Tssr5034	transcription start site region 5034	1399 bp downstream
Tssr143060	transcription start site region 143060	1119 bp upstream
Tssr143061	transcription start site region 143061	1503 bp upstream
Tssr146764	transcription start site region 146764	830 bp downstream
Tssr146765	transcription start site region 146765	908 bp downstream
Tssr146766	transcription start site region 146766	964 bp downstream
Tssr146767	transcription start site region 146767	990 bp downstream
Tssr146768	transcription start site region 146768	1040 bp downstream
Tssr146769	transcription start site region 146769	1348 bp downstream
Tssr146770	transcription start site region 146770	1384 bp downstream
Tssr146771	transcription start site region 146771	1412 bp downstream