rs33243250 SNP Detail

Summary

• ID
  rs33243250
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:148491131 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TCCATACACT CCTAGGAGCC TACATCACAG ACCCAACTCC CTAAGAATCC AAACGTAGAG
  GAAAACAGAG GCCCAGGCTC ACCCCAATGT GGCTTCCCTA TTTCAGCATC TGTGGGTTCC
  ATGGTTTTCC ACGGTCGCTC TTAATGTAGT TTCTCTCCGT GTGTGTTTAA TAAGCACAGA
  ACCCTTCCCC ACCATGAACC CTTCTGGAAA TCCAAACAAC TGAAGCTTTT CAGTCCACCA
  ACAGATTCTG AGGGAGTACT GGATTACCAT TTAAAGATGT TTACCACGTT AATTCCCCAC
  K
  CCACACCTAC TCTCTCAGCC CCCTTTCCCA TGCCACACCT ACTCTCCTCA GCCCCCTTCC
  CCCTCCCCAC CACCCACCAT GACTCTGACA GACCTAAGTG CTGTTGAAAG GCAAGAAGCA
  GAAGTTGGCA GAACGAAGGA AAGCTGTCAG CCAGCCCCAT TGCCAGGGAT GTAATGACCC
  CTACTTTGAG CCCAAAATCA CACAGCATGT CTTCTACGGG ATGCTGTCTG CCACTGCCCC
  TTCTGTATAA GGCCGCGCCT TTTAAAAGTA AGCTTGCTGC ACCTGGTTGC ATTTCTAACT
                                                                   
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss45754765	mCV22903052	ABI	CRAMUS_MOUSE	f	SNP	T	G
ss144691558	ENSMUSSNP7236493	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs33243250					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:148491131 () rs orientation: forward

Symbol	Name	Function Class
1700013A02Rik	RIKEN cDNA 1700013A02 gene	460 bp upstream
Cpgi17076	CpG island 17076	1174 bp distal
Gm72666	predicted gene, 72666	within coordinates
Gm72684	predicted gene, 72684	396 bp upstream
Rr378792	regulatory region 378792	within coordinates
Rr625194	regulatory region 625194	1670 bp distal
Rr625195	regulatory region 625195	1042 bp distal
Rr625196	regulatory region 625196	1504 bp distal
Rr625197	regulatory region 625197	470 bp distal
Rr625198	regulatory region 625198	166 bp distal
Rr625199	regulatory region 625199	within coordinates
Tssr49862	transcription start site region 49862	1928 bp downstream
Tssr54574	transcription start site region 54574	1893 bp upstream
Tssr54575	transcription start site region 54575	1804 bp upstream
Tssr54576	transcription start site region 54576	1633 bp upstream
Tssr54577	transcription start site region 54577	1478 bp upstream
Tssr54578	transcription start site region 54578	440 bp upstream
Tssr54579	transcription start site region 54579	296 bp upstream
Ubl3	ubiquitin-like 3	1532 bp upstream