rs33244262 SNP Detail

Summary

• ID
  rs33244262
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:26729922 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCTCCCTGTG ACTGGGCGAG AAGCAGCAGC TTCTATACGG
  GACCTGTGGG GACAGTCGGT GTGCAGGCTT GGCACCAGCC TATGAACCTG TCAGTTCCTC
  W
  CATTTGGATT TGTCTTGGTG TTGGGGTGGG GCTAGGGGAG GGGCTTCCCA ATAATGGCTG
  AAAGTGCATC CTTCTCACTG TCTACTCCGT AACCTTGGG                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39512249	mCV22899490	ABI	CRAMUS_MOUSE	f	SNP	T	A	T	A
ss145404948	ENSMUSSNP3513554	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33244262					SNP	T	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:26729922 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8811	CpG island 8811	1925 bp distal
Gm56886	predicted gene, 56886	955 bp downstream
Rr339410	regulatory region 339410	1121 bp distal
Rr392454	regulatory region 392454	within coordinates
Rr405113	regulatory region 405113	1843 bp downstream
Rr406958	regulatory region 406958	258 bp distal
Tssr5044	transcription start site region 5044	1984 bp downstream
Tssr5045	transcription start site region 5045	1480 bp upstream
Tssr5046	transcription start site region 5046	1427 bp upstream
Tssr5047	transcription start site region 5047	1416 bp upstream
Tssr143235	transcription start site region 143235	1240 bp downstream
Tssr143236	transcription start site region 143236	1207 bp downstream
Tssr143237	transcription start site region 143237	1779 bp upstream
Tssr146956	transcription start site region 146956	1449 bp upstream
Tssr146957	transcription start site region 146957	1379 bp upstream