rs33244274 SNP Detail

Summary

• ID
  rs33244274
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:106520308 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTAGTATAG GTATTTTCCA
  AATTCCGTGT GGGACATATA CCTATACTTT AAAAAAAAAA AGCTTTTAAA AAAAGAAAAG
  GAGTTCTCTG CTTATGACCT CCACAGCTAG CTGAATATCC CATCTTCCTT TTATCCCTCC
  ATCCCACACA TTGACTGGGG AGAAGCCATC CCTAAAGTTT TCTTTTCTTG TCTTTATTCC
  Y
  ACTTTTTAAA AATTGTTAAC CCACATTTCC AGAGACTTCA CCAGCCCACT GATGCCAATT
  AGCTCACTTG AAAAAAAAAA AAAATCAATG TCTCTGGCTG GTTTTCTCAC ACAGGACTTT
  GTCCCTGCCT GTTACCGAAG CCCTGCCTGC AGCAGCCATA TGCTTCCAGC TCACTGCACA
  GCGCCCTCTA GGCCTTGGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47774018	NES11270991	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33244274					SNP	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47774018	NES11270991	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:106520308 () rs orientation: forward

Symbol	Name	Function Class
Gm28111	predicted gene 28111	within coordinates
Grm2	glutamate receptor, metabotropic 2	1425 bp downstream
Rr686373	regulatory region 686373	55 bp proximal
Rr686374	regulatory region 686374	247 bp proximal
Rr686375	regulatory region 686375	875 bp proximal