rs33245128 SNP Detail

Summary

• ID
  rs33245128
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164117587 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATAAG GTATTTACTG TGGCCCTTCC
  R
  AATGTGTTTT CTCTGACATT TCCGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45254960	mCV23736640	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G
ss148221271	ENSMUSSNP5778048	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A
ss320605182	CHEV_2_164101403	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs33245128					SNP	G	G	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164117587 () rs orientation: forward

Symbol	Name	Function Class
D2Mit29	DNA segment, Chr 2, Massachusetts Institute of Technology 29	1445 bp proximal
Svs4	seminal vesicle secretory protein 4	289 bp downstream
Tssr21549	transcription start site region 21549	285 bp upstream
Tssr21550	transcription start site region 21550	391 bp upstream
Tssr21551	transcription start site region 21551	1435 bp upstream
Tssr21552	transcription start site region 21552	1479 bp upstream
Tssr27409	transcription start site region 27409	311 bp downstream
Tssr27410	transcription start site region 27410	334 bp downstream
Tssr27411	transcription start site region 27411	371 bp downstream
Tssr27412	transcription start site region 27412	409 bp downstream
Tssr27413	transcription start site region 27413	416 bp downstream
Tssr27414	transcription start site region 27414	434 bp downstream
Tssr27415	transcription start site region 27415	450 bp downstream
Tssr27416	transcription start site region 27416	1410 bp downstream
Tssr27417	transcription start site region 27417	1419 bp downstream
Tssr27418	transcription start site region 27418	1490 bp downstream
Tssr27419	transcription start site region 27419	1500 bp downstream
Tssr27420	transcription start site region 27420	1520 bp downstream
Tssr27421	transcription start site region 27421	1544 bp downstream
Tssr27422	transcription start site region 27422	1562 bp downstream
Tssr27423	transcription start site region 27423	1600 bp downstream
Tssr27424	transcription start site region 27424	1630 bp downstream
Tssr27425	transcription start site region 27425	1651 bp downstream
Tssr27426	transcription start site region 27426	1909 bp downstream