rs33245597 SNP Detail

Summary

• ID
  rs33245597
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:61963833 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCCT TTTCAACCAG ATACTCTAAC
  R
  TCCTTCCTGT AAAGTGTAGA GTGGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45755427	mCV23377789	ABI	CRAMUS_MOUSE	f	SNP		A	G				A
ss61171335	NES16678236	PERLEGEN	MM_PANEL2	f	SNP	A			G	A	G		G	G	A		G	A	G		G
ss148545814	ENSMUSSNP1214394	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G
ss321556035	CHEV_5_62197729	CHEVERUD	SCREENING_POP	f	SNP											G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33245597					SNP	A	A	G	G	A	G	A	G	G	A	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61171335	NES16678236	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:61963833 () rs orientation: forward

Symbol	Name	Function Class
Gm73520	predicted gene, 73520	255 bp upstream
Tssr46354	transcription start site region 46354	210 bp upstream
Tssr46355	transcription start site region 46355	232 bp upstream
Tssr46356	transcription start site region 46356	249 bp upstream