rs33246794 SNP Detail

Summary

• ID
  rs33246794
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:106768498 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGGAAAAGA GGGAGGAGAT GGTAAGTAAT TATTAGTCTC
  CATTTCCCCT GGAAAAAACT CTGTCAGCAG TTTTGCTAGA AGGGATTAAT TTTTTTTTTT
  W
  ACTCGGGTAC TCAGAAGTGC ACAGAGCCCT TAGGTTGCTG GGGTCCTTGT ACCCAGTTGC
  ATGCTGGGAA TGAACATTAC CCAAGTGACC CACACACAAC                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47774669	NES11262114	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	A	A	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33246794					SNP	T	T	T	T	T	T	A	T	A	A	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47774669	NES11262114	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:106768498 () rs orientation: forward

Symbol	Name	Function Class
4930524O07Rik	RIKEN cDNA 4930524O07 gene	212 bp upstream
Cpgi22278	CpG island 22278	65 bp proximal
Dock3	dedicator of cyto-kinesis 3	1526 bp downstream
Manf	mesencephalic astrocyte-derived neurotrophic factor	within coordinates
Rr368849	regulatory region 368849	601 bp upstream
Rr686409	regulatory region 686409	within coordinates
Rr686410	regulatory region 686410	106 bp proximal
Rr686411	regulatory region 686411	488 bp proximal
Rr686412	regulatory region 686412	656 bp proximal
Rr686413	regulatory region 686413	670 bp proximal
Rr686414	regulatory region 686414	926 bp proximal
Tssr86942	transcription start site region 86942	1088 bp downstream
Tssr86943	transcription start site region 86943	815 bp upstream
Tssr86944	transcription start site region 86944	1151 bp upstream
Tssr86945	transcription start site region 86945	1177 bp upstream
Tssr91353	transcription start site region 91353	67 bp downstream
Tssr91354	transcription start site region 91354	81 bp downstream
Tssr91355	transcription start site region 91355	95 bp downstream
Tssr91356	transcription start site region 91356	102 bp downstream
Tssr91357	transcription start site region 91357	609 bp downstream
Tssr91358	transcription start site region 91358	632 bp downstream
Tssr91359	transcription start site region 91359	666 bp downstream