rs33246795 SNP Detail

Summary

• ID
  rs33246795
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:106768635 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCTGGGGTCC TTGTACCCAG TTGCATGCTG GGAATGAACA
  TTACCCAAGT GACCCACACA CAACCCTCTC TGCTCTTTTC AAGTTTAAGT CTAGAGTGGA
  Y
  ACGTGTCCTT GAGGGAACTC ATTGTGACCT CATAAGGGAC AGATTGAAGG CTGAAGCAAA
  TGATCAAAAT GCTCCTCATT CCAAATACAT CGAACCCCCA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47774671	NES11262116	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33246795					SNP	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47774671	NES11262116	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:106768635 () rs orientation: forward

Symbol	Name	Function Class
4930524O07Rik	RIKEN cDNA 4930524O07 gene	75 bp upstream
Cpgi22278	CpG island 22278	within coordinates
Dock3	dedicator of cyto-kinesis 3	1389 bp downstream
Manf	mesencephalic astrocyte-derived neurotrophic factor	within coordinates
Rr368849	regulatory region 368849	464 bp upstream
Rr686409	regulatory region 686409	32 bp distal
Rr686410	regulatory region 686410	within coordinates
Rr686411	regulatory region 686411	351 bp proximal
Rr686412	regulatory region 686412	519 bp proximal
Rr686413	regulatory region 686413	533 bp proximal
Rr686414	regulatory region 686414	789 bp proximal
Rr686415	regulatory region 686415	1998 bp proximal
Tssr86942	transcription start site region 86942	1225 bp downstream
Tssr86943	transcription start site region 86943	678 bp upstream
Tssr86944	transcription start site region 86944	1014 bp upstream
Tssr86945	transcription start site region 86945	1040 bp upstream
Tssr91353	transcription start site region 91353	63 bp upstream
Tssr91354	transcription start site region 91354	45 bp upstream
Tssr91355	transcription start site region 91355	39 bp upstream
Tssr91356	transcription start site region 91356	within coordinates
Tssr91357	transcription start site region 91357	472 bp downstream
Tssr91358	transcription start site region 91358	495 bp downstream
Tssr91359	transcription start site region 91359	529 bp downstream