rs33246797 SNP Detail

Summary

• ID
  rs33246797
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:106769516 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGGAC TCGTAGAGCA GCATTTCTGG
  Y
  GCCACCCTAT AGCCAGTAGG ATGGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46314709	mCV22323067	ABI	CRAMUS_MOUSE	f	SNP		T					C		C
ss47774675	NES11262122	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T		C	C	T	C	C	T	T	C	T
ss136941106	ENSMUSSNP1106443	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33246797					SNP	T	T	T	T	T	T	C	C	C	T	C	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47774675	NES11262122	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:106769516 () rs orientation: forward

Symbol	Name	Function Class
4930524O07Rik	RIKEN cDNA 4930524O07 gene	within coordinates
Cpgi22278	CpG island 22278	within coordinates
Dock3	dedicator of cyto-kinesis 3	508 bp downstream
Manf	mesencephalic astrocyte-derived neurotrophic factor	379 bp upstream
Rr368849	regulatory region 368849	116 bp downstream
Rr686409	regulatory region 686409	913 bp distal
Rr686410	regulatory region 686410	796 bp distal
Rr686411	regulatory region 686411	509 bp distal
Rr686412	regulatory region 686412	341 bp distal
Rr686413	regulatory region 686413	93 bp distal
Rr686414	regulatory region 686414	within coordinates
Rr686415	regulatory region 686415	1117 bp proximal
Tssr86943	transcription start site region 86943	194 bp downstream
Tssr86944	transcription start site region 86944	133 bp upstream
Tssr86945	transcription start site region 86945	159 bp upstream
Tssr91353	transcription start site region 91353	944 bp upstream
Tssr91354	transcription start site region 91354	926 bp upstream
Tssr91355	transcription start site region 91355	920 bp upstream
Tssr91356	transcription start site region 91356	879 bp upstream
Tssr91357	transcription start site region 91357	397 bp upstream
Tssr91358	transcription start site region 91358	370 bp upstream
Tssr91359	transcription start site region 91359	347 bp upstream