rs33246798 SNP Detail

Summary

• ID
  rs33246798
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:106769690 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGATTGCCGA GCCAATCAAG GGGAACGTCC ACTTTGATTC
  GCCGGCTTGC TCAGACCCCG CTTTAACCTG GGTCAGACGG CAGAACCTCT TAAACGAAAG
  S
  TCTCGGCCTG CCTAGTCGTT TCCCGTCCTG GGCCTCTGAG GACCTCGCGG CAAGGCTGCG
  AGCAGAGGCG TTGGTCTACC TTCCAAATGG AGGCCATGGG                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47774677	NES11262125	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	G	C	G	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33246798					SNP	C	C	C	C	C	G	C	G	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47774677	NES11262125	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:106769690 () rs orientation: forward

Symbol	Name	Function Class
4930524O07Rik	RIKEN cDNA 4930524O07 gene	within coordinates
Cpgi22278	CpG island 22278	within coordinates
Dock3	dedicator of cyto-kinesis 3	334 bp downstream
Manf	mesencephalic astrocyte-derived neurotrophic factor	553 bp upstream
Rr368849	regulatory region 368849	290 bp downstream
Rr686409	regulatory region 686409	1087 bp distal
Rr686410	regulatory region 686410	970 bp distal
Rr686411	regulatory region 686411	683 bp distal
Rr686412	regulatory region 686412	515 bp distal
Rr686413	regulatory region 686413	267 bp distal
Rr686414	regulatory region 686414	within coordinates
Rr686415	regulatory region 686415	943 bp proximal
Tssr86943	transcription start site region 86943	368 bp downstream
Tssr86944	transcription start site region 86944	16 bp downstream
Tssr86945	transcription start site region 86945	4 bp downstream
Tssr91353	transcription start site region 91353	1118 bp upstream
Tssr91354	transcription start site region 91354	1100 bp upstream
Tssr91355	transcription start site region 91355	1094 bp upstream
Tssr91356	transcription start site region 91356	1053 bp upstream
Tssr91357	transcription start site region 91357	571 bp upstream
Tssr91358	transcription start site region 91358	544 bp upstream
Tssr91359	transcription start site region 91359	521 bp upstream