rs33246802 SNP Detail

Summary

• ID
  rs33246802
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:106770788 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTGGACTGAG GTTCAGACGT GCCTGGAAAC AAACCTAAAG
  CTGCCCTACC TAAGAATCAC ATCCCAAGCT AGACTTGACC CTCATACCTG TGAACCCAGA
  Y
  GGTCCAGAAA CAAGCTTACC AGTGAGTCTG GGCTCAGGAA CAGGTGTGTG TGCCCTTGGT
  GCTGGGGCTA TTGGATTGGC CTACCTACAT CCTCAACAGT                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47774684	NES11262133	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33246802					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47774684	NES11262133	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:106770788 () rs orientation: forward

Symbol	Name	Function Class
4930524O07Rik	RIKEN cDNA 4930524O07 gene	within coordinates
Cpgi22278	CpG island 22278	865 bp distal
Dock3	dedicator of cyto-kinesis 3	within coordinates
Manf	mesencephalic astrocyte-derived neurotrophic factor	1651 bp upstream
Rr368849	regulatory region 368849	1388 bp downstream
Rr686411	regulatory region 686411	1781 bp distal
Rr686412	regulatory region 686412	1613 bp distal
Rr686413	regulatory region 686413	1365 bp distal
Rr686414	regulatory region 686414	659 bp distal
Rr686415	regulatory region 686415	134 bp distal
Tssr86943	transcription start site region 86943	1466 bp downstream
Tssr86944	transcription start site region 86944	1114 bp downstream
Tssr86945	transcription start site region 86945	1102 bp downstream
Tssr91357	transcription start site region 91357	1669 bp upstream
Tssr91358	transcription start site region 91358	1642 bp upstream
Tssr91359	transcription start site region 91359	1619 bp upstream