rs33247148 SNP Detail

Summary

• ID
  rs33247148
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:66080475 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAATT TACTGGTACT ACTAATTGTA
  W
  GCATATGTTT TAAACAGCAA CACTG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	C57BL/6J	DBA/2J	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss39511699	mCV24592651	ABI	CRAMUS_MOUSE	f	SNP	T	A		T	A
ss62850158	NES17384881	PERLEGEN	MM_PANEL2	f	SNP			T				A	A		T
ss145840865	ENSMUSSNP2556808	ENSEMBL	ENSEMBL_Sanger	f	SNP					A
ss325428011	CHEV_17_66122820	CHEVERUD	SCREENING_POP	f	SNP						T			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	C57BL/6J	DBA/2J	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs33247148					SNP	T	A	T	T	A	T	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62850158	NES17384881	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:66080475 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9418	CpG island 9418	504 bp distal
Rab31	RAB31, member RAS oncogene family	728 bp upstream
Rr529807	regulatory region 529807	851 bp distal
Rr529808	regulatory region 529808	927 bp distal
Rr529809	regulatory region 529809	238 bp distal
Rr529810	regulatory region 529810	97 bp proximal
Rr529811	regulatory region 529811	202 bp proximal
Rr529812	regulatory region 529812	407 bp proximal
Tssr149074	transcription start site region 149074	830 bp upstream
Tssr149075	transcription start site region 149075	804 bp upstream
Tssr149076	transcription start site region 149076	785 bp upstream