rs33247343 SNP Detail

Summary

• ID
  rs33247343
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:118733997 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGGG AACAGGAAGA GAGGAGTCTC
  R
  GGCTGATAAC AGCTGAGAAC ATGGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45255336	mCV22544962	ABI	CRAMUS_MOUSE	f	SNP	G	A	G
ss147316876	ENSMUSSNP1562616	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		G
ss320472574	CHEV_2_118729252	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33247343					SNP	G	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118733997 () rs orientation: forward

Symbol	Name	Function Class
Bahd1	bromo adjacent homology domain containing 1	Intron
Cpgi12098	CpG island 12098	373 bp distal
Rr563370	regulatory region 563370	within coordinates
Rr563371	regulatory region 563371	1873 bp distal
Rr563372	regulatory region 563372	1415 bp distal
Rr563373	regulatory region 563373	963 bp distal
Rr563374	regulatory region 563374	470 bp distal
Rr563375	regulatory region 563375	1935 bp proximal
Tssr19590	transcription start site region 19590	1899 bp downstream
Tssr19591	transcription start site region 19591	1853 bp downstream