rs33247590 SNP Detail

Summary

• ID
  rs33247590
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:70353429 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCAT ATTCTTTTCC TGTTGAAATC
  R
  ATAATAAAAT TCTAAATGTT ACTTA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46252171	mCV22895307	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	G	A
ss145115902	ENSMUSSNP1478906	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G		A
ss322697759	CHEV_8_72424678	CHEVERUD	SCREENING_POP	f	SNP						A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33247590					SNP	A	A	G	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:70353429 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20428	CpG island 20428	616 bp proximal
Ndufa13	NADH:ubiquinone oxidoreductase subunit A13	within coordinates
Rr400887	regulatory region 400887	752 bp upstream
Rr664594	regulatory region 664594	1523 bp distal
Rr664595	regulatory region 664595	915 bp proximal
Rr664596	regulatory region 664596	1769 bp proximal
Rr664597	regulatory region 664597	1909 bp proximal
Tssk6	testis-specific serine kinase 6	1405 bp upstream
Tssr2594	transcription start site region 2594	989 bp upstream
Tssr77689	transcription start site region 77689	1399 bp upstream
Tssr81543	transcription start site region 81543	355 bp downstream
Tssr81544	transcription start site region 81544	853 bp downstream
Tssr81545	transcription start site region 81545	882 bp downstream
Tssr81546	transcription start site region 81546	1206 bp downstream
Tssr81547	transcription start site region 81547	1236 bp downstream