rs33247792 SNP Detail

Summary

• ID
  rs33247792
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:65493670 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAAGGTTCTA TATGTACTTT GGTTTTTCCT TGGAGAATGG
  AATTTCATTT CAGAAGTTTT AGCAAACTAG TGGTTCAGTT TGTCTTGCAT TTTAAATTAA
  K
  TTGGCTCCTT CATTAATGAT GCAAAAAATA AACCAGGGAG AGCAGTTGGT TGGAAAAGAT
  CTATTAGGGC TGGATTGGCA GGGAATCTTA CAGACCTCC                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C57BL/6J	DBA/2J
ss45255248	mCV23763840	ABI	CRAMUS_MOUSE	f	SNP	G	G	T
ss146714843	ENSMUSSNP4403714	ENSEMBL	ENSEMBL_Sanger	f	SNP			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C57BL/6J	DBA/2J
rs33247792					SNP	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:65493670 () rs orientation: forward

Symbol	Name	Function Class
Rr1450	regulatory region 1450	within coordinates
Rr558096	regulatory region 558096	1254 bp proximal
Rr558097	regulatory region 558097	1900 bp proximal
Scn2a	sodium channel, voltage-gated, type II, alpha	Intron