rs33248359 SNP Detail

Summary

• ID
  rs33248359
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:96359471 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACACT CAAGATACAA CTCGTTTGTC
  Y
  AGTGAACATG TTGCAAATAT ACTCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45755364	mCV25015037	ABI	CRAMUS_MOUSE	f	SNP		C	C					C		T
ss51771833	NES14721793	PERLEGEN	MM_PANEL2	f	SNP	C		C	T	T	T	T		C	T	T	C		C	T	C	C		C
ss321616901	CHEV_5_96640631	CHEVERUD	SCREENING_POP	f	SNP													T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33248359					SNP	C	C	C	T	T	T	T	C	C	T	T	C	T	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51771833	NES14721793	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:96359471 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16074	CpG island 16074	1201 bp distal
Gm72185	predicted gene, 72185	1544 bp upstream
Mrpl1	mitochondrial ribosomal protein L1	within coordinates
Rr367885	regulatory region 367885	1360 bp downstream
Rr614894	regulatory region 614894	1571 bp distal
Rr614895	regulatory region 614895	1458 bp distal
Rr614896	regulatory region 614896	635 bp distal
Tssr47396	transcription start site region 47396	1849 bp downstream
Tssr47397	transcription start site region 47397	1451 bp downstream
Tssr51962	transcription start site region 51962	1586 bp upstream