rs33249150 SNP Detail

Summary

• ID
  rs33249150
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:148491326 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAATG ACCCCTACTT TGAGCCCAAA
  W
  TCACACAGCA TGTCTTCTAC GGGAT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45755842	mCV22903054	ABI	CRAMUS_MOUSE	f	SNP	T	T	A
ss144691583	ENSMUSSNP6504642	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss321718367	CHEV_5_149366092	CHEVERUD	SCREENING_POP	f	SNP				A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs33249150					SNP	T	T	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:148491326 () rs orientation: forward

Symbol	Name	Function Class
1700013A02Rik	RIKEN cDNA 1700013A02 gene	655 bp upstream
Cpgi17076	CpG island 17076	1369 bp distal
Gm72666	predicted gene, 72666	within coordinates
Gm72684	predicted gene, 72684	591 bp upstream
Rr378792	regulatory region 378792	within coordinates
Rr378793	regulatory region 378793	1872 bp upstream
Rr625194	regulatory region 625194	1865 bp distal
Rr625195	regulatory region 625195	1237 bp distal
Rr625196	regulatory region 625196	1699 bp distal
Rr625197	regulatory region 625197	665 bp distal
Rr625198	regulatory region 625198	361 bp distal
Rr625199	regulatory region 625199	within coordinates
Tssr54575	transcription start site region 54575	1999 bp upstream
Tssr54576	transcription start site region 54576	1828 bp upstream
Tssr54577	transcription start site region 54577	1673 bp upstream
Tssr54578	transcription start site region 54578	635 bp upstream
Tssr54579	transcription start site region 54579	491 bp upstream
Ubl3	ubiquitin-like 3	1727 bp upstream