rs33250235 SNP Detail

Summary

• ID
  rs33250235
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:109747533 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCATGGAT GATTAACCGC
  TAATTTAGCT CCCAAGTGTG AATGAAAAAG GGTACTAAGA TCTCAGAGGT GATGTGAGAT
  ACAGGAGGGG TCACGCTGTT TTAATTTAGT GCACGGTTGA ACTCAAAAAT TTGGATCAGA
  TAGAAAGAAA TGTTTCTCCC TCCTTTTCGA CCCCCACCCC CACCCCCATT TCTTTCCTCT
  R
  TTTGCAAAGC TCTCAGTGCC CTTGCCCTTA AGAACAGCGA AGAGTCATTT GACACGTCTG
  AAAGCTGGAG GCGAGTTTTA CTTTTCAGGT CATCCAATTT AGGAGATCCA ATTTCTGCGG
  AGGGGAGAAA AAAACTGGGT GGGGGAGGGA AACAGCAGAC TCCTGGTCTT CCGATCTGTC
  TACCTTCAAT ACACAACCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45255541	mCV23138120	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	G
ss147206170	ENSMUSSNP3158435	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33250235					SNP	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:109747533 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12039	CpG island 12039	280 bp proximal
Lgr4	leucine-rich repeat-containing G protein-coupled receptor 4	459 bp upstream
Rr397176	regulatory region 397176	170 bp upstream
Rr562509	regulatory region 562509	within coordinates
Rr562510	regulatory region 562510	470 bp proximal
Rr562511	regulatory region 562511	575 bp proximal
Rr562512	regulatory region 562512	614 bp proximal
Rr562513	regulatory region 562513	1002 bp proximal
Tssr19307	transcription start site region 19307	383 bp upstream
Tssr19308	transcription start site region 19308	408 bp upstream
Tssr19309	transcription start site region 19309	451 bp upstream
Tssr19310	transcription start site region 19310	491 bp upstream
Tssr19311	transcription start site region 19311	535 bp upstream