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rs33251087 SNP Detail
Summary
  • ID
    rs33251087
  • Variation Type
    SNP
  • Alleles
    A/T
Genome Location and Flanking Sequence
  • Location
    ChrMT:2238 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                          GAAATATAAT AATAAGACGA GAAGACCCTA TGGAGCTTAA
ATTATATAAC TTATCTATTT AATTTATTAA ACCTAATGGC CCAAAAACTA TAGTATAAGT
W
TGAAATTTCG GTTGGGGTGA CCTCGGAGAA TAAAAAATCC TCCGAATGAT TATAACCTAG
ACTTACAAGT CAAAGTAAAA TCAACATATC TTATTGACCC                      

W = A/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss46790925 NES10981294 PERLEGEN MM_PANEL2 f SNP T T T T T T T T T A T T A T
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs33251087 SNP T T T T T T T T T A T T A T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss46790925 NES10981294 PERLEGEN MM_PANEL f SNP A/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: ChrMT:2238 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
mt-Nd1 mitochondrially encoded NADH dehydrogenase 1 513 bp upstream
mt-Nd2 mitochondrially encoded NADH dehydrogenase 2 1676 bp upstream
mt-Rnr1 mitochondrially encoded 12S rRNA 1214 bp downstream
mt-Rnr2 mitochondrially encoded 16S rRNA within coordinates
mt-Ti mitochondrially encoded tRNA isoleucine 1468 bp upstream
mt-Tl1 mitochondrially encoded tRNA leucine 1 438 bp upstream
mt-Tm mitochondrially encoded tRNA methionine 1607 bp upstream
mt-Tq mitochondrially encoded tRNA glutamine 1534 bp downstream
mt-Tv mitochondrially encoded tRNA valine 1145 bp downstream
Tssr160107 transcription start site region 160107 1740 bp downstream
Tssr160108 transcription start site region 160108 1635 bp downstream
Tssr160109 transcription start site region 160109 1132 bp downstream
Tssr160110 transcription start site region 160110 95 bp downstream
Tssr160111 transcription start site region 160111 76 bp downstream
Tssr160112 transcription start site region 160112 60 bp downstream
Tssr160113 transcription start site region 160113 27 bp downstream
Tssr160114 transcription start site region 160114 12 bp upstream
Tssr160115 transcription start site region 160115 42 bp upstream
Tssr160116 transcription start site region 160116 84 bp upstream
Tssr160117 transcription start site region 160117 107 bp upstream
Tssr160118 transcription start site region 160118 131 bp upstream
Tssr160119 transcription start site region 160119 153 bp upstream
Tssr160120 transcription start site region 160120 181 bp upstream
Tssr160121 transcription start site region 160121 505 bp upstream
Tssr160122 transcription start site region 160122 615 bp upstream
Tssr160123 transcription start site region 160123 810 bp upstream
Tssr160124 transcription start site region 160124 826 bp upstream
Tssr160125 transcription start site region 160125 875 bp upstream
Tssr160126 transcription start site region 160126 933 bp upstream
Tssr160127 transcription start site region 160127 1137 bp upstream
Tssr160128 transcription start site region 160128 1196 bp upstream
Tssr160129 transcription start site region 160129 1668 bp upstream
Tssr160130 transcription start site region 160130 1767 bp upstream
Tssr160131 transcription start site region 160131 1990 bp upstream
Tssr160216 transcription start site region 160216 1925 bp upstream
Tssr160217 transcription start site region 160217 1871 bp upstream
Tssr160218 transcription start site region 160218 1844 bp upstream
Tssr160219 transcription start site region 160219 1828 bp upstream
Tssr160220 transcription start site region 160220 1792 bp upstream
Tssr160221 transcription start site region 160221 1753 bp upstream
Tssr160222 transcription start site region 160222 1705 bp upstream
Tssr160223 transcription start site region 160223 1657 bp upstream
Tssr160224 transcription start site region 160224 1597 bp upstream
Tssr160225 transcription start site region 160225 1550 bp upstream
Tssr160226 transcription start site region 160226 1497 bp upstream
Tssr160227 transcription start site region 160227 1486 bp upstream
Tssr160228 transcription start site region 160228 1450 bp upstream
Tssr160229 transcription start site region 160229 1392 bp upstream
Tssr160230 transcription start site region 160230 1384 bp upstream
Tssr160231 transcription start site region 160231 1354 bp upstream
Tssr160232 transcription start site region 160232 995 bp upstream
Tssr160233 transcription start site region 160233 972 bp upstream
Tssr160234 transcription start site region 160234 939 bp upstream
Tssr160235 transcription start site region 160235 890 bp upstream
Tssr160236 transcription start site region 160236 815 bp upstream
Tssr160237 transcription start site region 160237 783 bp upstream
Tssr160238 transcription start site region 160238 732 bp upstream
Tssr160239 transcription start site region 160239 694 bp upstream
Tssr160240 transcription start site region 160240 619 bp upstream
Tssr160241 transcription start site region 160241 585 bp upstream
Tssr160242 transcription start site region 160242 293 bp upstream
Tssr160243 transcription start site region 160243 229 bp upstream
Tssr160244 transcription start site region 160244 182 bp upstream
Tssr160245 transcription start site region 160245 129 bp upstream
Tssr160246 transcription start site region 160246 56 bp upstream
Tssr160247 transcription start site region 160247 20 bp downstream
Tssr160248 transcription start site region 160248 101 bp downstream
Tssr160249 transcription start site region 160249 122 bp downstream
Tssr160250 transcription start site region 160250 181 bp downstream
Tssr160251 transcription start site region 160251 228 bp downstream
Tssr160252 transcription start site region 160252 606 bp downstream
Tssr160253 transcription start site region 160253 783 bp downstream
Tssr160254 transcription start site region 160254 873 bp downstream
Tssr160255 transcription start site region 160255 915 bp downstream
Tssr160256 transcription start site region 160256 1002 bp downstream
Tssr160257 transcription start site region 160257 1069 bp downstream
Tssr160258 transcription start site region 160258 1143 bp downstream
Tssr160259 transcription start site region 160259 1160 bp downstream
Tssr160260 transcription start site region 160260 1196 bp downstream
Tssr160261 transcription start site region 160261 1424 bp downstream
Tssr160262 transcription start site region 160262 1459 bp downstream
Tssr160263 transcription start site region 160263 1474 bp downstream
Tssr160264 transcription start site region 160264 1517 bp downstream
Tssr160265 transcription start site region 160265 1559 bp downstream
Tssr160266 transcription start site region 160266 1589 bp downstream
Tssr160267 transcription start site region 160267 1645 bp downstream
Tssr160268 transcription start site region 160268 1804 bp downstream
Tssr160269 transcription start site region 160269 1850 bp downstream
Tssr160270 transcription start site region 160270 1989 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory