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rs33251096 SNP Detail
Summary
  • ID
    rs33251096
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    ChrMT:4123 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                          TACTAGCAAT TATCCCCATA CTAATCAACA AAAAAAACCC
ACGATCAACT GAAGCAGCAA CAAAATACTT CGTCACACAA GCAACAGCCT CAATAATTAT
Y
CTCCTGGCCA TCGTACTCAA CTATAAACAA CTAGGAACAT GAATATTTCA ACAACAAACA
AACGGTCTTA TCCTTAACAT AACATTAATA GCCCTATCCA                      

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss46791024 NES10981352 PERLEGEN MM_PANEL2 f SNP C C C C C C T C C C C C C C C
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs33251096 SNP C C C C C C T C C C C C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss46791024 NES10981352 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: ChrMT:4123 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
mt-Co1 mitochondrially encoded cytochrome c oxidase I 1205 bp upstream
mt-Nd1 mitochondrially encoded NADH dehydrogenase 1 416 bp downstream
mt-Nd2 mitochondrially encoded NADH dehydrogenase 2 within coordinates
mt-Rnr2 mitochondrially encoded 16S rRNA 1448 bp downstream
mt-Rr998 mitochondrially encoded regulatory region 998 within coordinates
mt-Ta mitochondrially encoded tRNA alanine 895 bp downstream
mt-Tc mitochondrially encoded tRNA cysteine 1069 bp downstream
mt-Ti mitochondrially encoded tRNA isoleucine 349 bp downstream
mt-Tl1 mitochondrially encoded tRNA leucine 1 1373 bp downstream
mt-Tm mitochondrially encoded tRNA methionine 210 bp downstream
mt-Tn mitochondrially encoded tRNA asparagine 966 bp downstream
mt-Tq mitochondrially encoded tRNA glutamine 281 bp upstream
mt-Tw mitochondrially encoded tRNA tryptophan 827 bp upstream
mt-Ty mitochondrially encoded tRNA tyrosine 1137 bp downstream
Tssr160110 transcription start site region 160110 1980 bp downstream
Tssr160111 transcription start site region 160111 1961 bp downstream
Tssr160112 transcription start site region 160112 1945 bp downstream
Tssr160113 transcription start site region 160113 1912 bp downstream
Tssr160114 transcription start site region 160114 1864 bp downstream
Tssr160115 transcription start site region 160115 1832 bp downstream
Tssr160116 transcription start site region 160116 1790 bp downstream
Tssr160117 transcription start site region 160117 1767 bp downstream
Tssr160118 transcription start site region 160118 1743 bp downstream
Tssr160119 transcription start site region 160119 1721 bp downstream
Tssr160120 transcription start site region 160120 1695 bp downstream
Tssr160121 transcription start site region 160121 1362 bp downstream
Tssr160122 transcription start site region 160122 1259 bp downstream
Tssr160123 transcription start site region 160123 1064 bp downstream
Tssr160124 transcription start site region 160124 1048 bp downstream
Tssr160125 transcription start site region 160125 1001 bp downstream
Tssr160126 transcription start site region 160126 941 bp downstream
Tssr160127 transcription start site region 160127 733 bp downstream
Tssr160128 transcription start site region 160128 678 bp downstream
Tssr160129 transcription start site region 160129 197 bp downstream
Tssr160130 transcription start site region 160130 109 bp downstream
Tssr160131 transcription start site region 160131 105 bp upstream
Tssr160132 transcription start site region 160132 163 bp upstream
Tssr160133 transcription start site region 160133 281 bp upstream
Tssr160134 transcription start site region 160134 543 bp upstream
Tssr160135 transcription start site region 160135 627 bp upstream
Tssr160136 transcription start site region 160136 747 bp upstream
Tssr160137 transcription start site region 160137 892 bp upstream
Tssr160138 transcription start site region 160138 1196 bp upstream
Tssr160139 transcription start site region 160139 1235 bp upstream
Tssr160140 transcription start site region 160140 1277 bp upstream
Tssr160141 transcription start site region 160141 1599 bp upstream
Tssr160142 transcription start site region 160142 1633 bp upstream
Tssr160143 transcription start site region 160143 1680 bp upstream
Tssr160144 transcription start site region 160144 1694 bp upstream
Tssr160145 transcription start site region 160145 1712 bp upstream
Tssr160146 transcription start site region 160146 1770 bp upstream
Tssr160147 transcription start site region 160147 1872 bp upstream
Tssr160148 transcription start site region 160148 1914 bp upstream
Tssr160246 transcription start site region 160246 1941 bp upstream
Tssr160247 transcription start site region 160247 1843 bp upstream
Tssr160248 transcription start site region 160248 1769 bp upstream
Tssr160249 transcription start site region 160249 1734 bp upstream
Tssr160250 transcription start site region 160250 1695 bp upstream
Tssr160251 transcription start site region 160251 1619 bp upstream
Tssr160252 transcription start site region 160252 1268 bp upstream
Tssr160253 transcription start site region 160253 1075 bp upstream
Tssr160254 transcription start site region 160254 997 bp upstream
Tssr160255 transcription start site region 160255 958 bp upstream
Tssr160256 transcription start site region 160256 841 bp upstream
Tssr160257 transcription start site region 160257 786 bp upstream
Tssr160258 transcription start site region 160258 732 bp upstream
Tssr160259 transcription start site region 160259 698 bp upstream
Tssr160260 transcription start site region 160260 470 bp upstream
Tssr160261 transcription start site region 160261 438 bp upstream
Tssr160262 transcription start site region 160262 414 bp upstream
Tssr160263 transcription start site region 160263 387 bp upstream
Tssr160264 transcription start site region 160264 347 bp upstream
Tssr160265 transcription start site region 160265 312 bp upstream
Tssr160266 transcription start site region 160266 250 bp upstream
Tssr160267 transcription start site region 160267 228 bp upstream
Tssr160268 transcription start site region 160268 68 bp upstream
Tssr160269 transcription start site region 160269 within coordinates
Tssr160270 transcription start site region 160270 104 bp downstream
Tssr160271 transcription start site region 160271 154 bp downstream
Tssr160272 transcription start site region 160272 206 bp downstream
Tssr160273 transcription start site region 160273 233 bp downstream
Tssr160274 transcription start site region 160274 263 bp downstream
Tssr160275 transcription start site region 160275 335 bp downstream
Tssr160276 transcription start site region 160276 426 bp downstream
Tssr160277 transcription start site region 160277 455 bp downstream
Tssr160278 transcription start site region 160278 510 bp downstream
Tssr160279 transcription start site region 160279 530 bp downstream
Tssr160280 transcription start site region 160280 633 bp downstream
Tssr160281 transcription start site region 160281 916 bp downstream
Tssr160282 transcription start site region 160282 1672 bp downstream
Tssr160283 transcription start site region 160283 1735 bp downstream
Tssr160284 transcription start site region 160284 1805 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory