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rs33251099 SNP Detail
Summary
  • ID
    rs33251099
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    ChrMT:4150 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                          ACAAAAAAAA CCCACGATCA ACTGAAGCAG CAACAAAATA
CTTCGTCACA CAAGCAACAG CCTCAATAAT TATCCTCCTG GCCATCGTAC TCAACTATAA
R
CAACTAGGAA CATGAATATT TCAACAACAA ACAAACGGTC TTATCCTTAA CATAACATTA
ATAGCCCTAT CCATAAAACT AGGCCTCGCC CCATTCCACT                      

R = A/G

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss46791027 NES10981354 PERLEGEN MM_PANEL2 f SNP A A A A A A A A A A G A A G A
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs33251099 SNP A A A A A A A A A A G A A G A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss46791027 NES10981354 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: ChrMT:4150 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
mt-Co1 mitochondrially encoded cytochrome c oxidase I 1178 bp upstream
mt-Nd1 mitochondrially encoded NADH dehydrogenase 1 443 bp downstream
mt-Nd2 mitochondrially encoded NADH dehydrogenase 2 within coordinates
mt-Rnr2 mitochondrially encoded 16S rRNA 1475 bp downstream
mt-Rr998 mitochondrially encoded regulatory region 998 within coordinates
mt-Ta mitochondrially encoded tRNA alanine 868 bp downstream
mt-Tc mitochondrially encoded tRNA cysteine 1042 bp downstream
mt-Ti mitochondrially encoded tRNA isoleucine 376 bp downstream
mt-Tl1 mitochondrially encoded tRNA leucine 1 1400 bp downstream
mt-Tm mitochondrially encoded tRNA methionine 237 bp downstream
mt-Tn mitochondrially encoded tRNA asparagine 939 bp downstream
mt-Tq mitochondrially encoded tRNA glutamine 308 bp upstream
mt-Tw mitochondrially encoded tRNA tryptophan 800 bp upstream
mt-Ty mitochondrially encoded tRNA tyrosine 1110 bp downstream
Tssr160111 transcription start site region 160111 1988 bp downstream
Tssr160112 transcription start site region 160112 1972 bp downstream
Tssr160113 transcription start site region 160113 1939 bp downstream
Tssr160114 transcription start site region 160114 1891 bp downstream
Tssr160115 transcription start site region 160115 1859 bp downstream
Tssr160116 transcription start site region 160116 1817 bp downstream
Tssr160117 transcription start site region 160117 1794 bp downstream
Tssr160118 transcription start site region 160118 1770 bp downstream
Tssr160119 transcription start site region 160119 1748 bp downstream
Tssr160120 transcription start site region 160120 1722 bp downstream
Tssr160121 transcription start site region 160121 1389 bp downstream
Tssr160122 transcription start site region 160122 1286 bp downstream
Tssr160123 transcription start site region 160123 1091 bp downstream
Tssr160124 transcription start site region 160124 1075 bp downstream
Tssr160125 transcription start site region 160125 1028 bp downstream
Tssr160126 transcription start site region 160126 968 bp downstream
Tssr160127 transcription start site region 160127 760 bp downstream
Tssr160128 transcription start site region 160128 705 bp downstream
Tssr160129 transcription start site region 160129 224 bp downstream
Tssr160130 transcription start site region 160130 136 bp downstream
Tssr160131 transcription start site region 160131 78 bp upstream
Tssr160132 transcription start site region 160132 136 bp upstream
Tssr160133 transcription start site region 160133 254 bp upstream
Tssr160134 transcription start site region 160134 516 bp upstream
Tssr160135 transcription start site region 160135 600 bp upstream
Tssr160136 transcription start site region 160136 720 bp upstream
Tssr160137 transcription start site region 160137 865 bp upstream
Tssr160138 transcription start site region 160138 1169 bp upstream
Tssr160139 transcription start site region 160139 1208 bp upstream
Tssr160140 transcription start site region 160140 1250 bp upstream
Tssr160141 transcription start site region 160141 1572 bp upstream
Tssr160142 transcription start site region 160142 1606 bp upstream
Tssr160143 transcription start site region 160143 1653 bp upstream
Tssr160144 transcription start site region 160144 1667 bp upstream
Tssr160145 transcription start site region 160145 1685 bp upstream
Tssr160146 transcription start site region 160146 1743 bp upstream
Tssr160147 transcription start site region 160147 1845 bp upstream
Tssr160148 transcription start site region 160148 1887 bp upstream
Tssr160149 transcription start site region 160149 1995 bp upstream
Tssr160246 transcription start site region 160246 1968 bp upstream
Tssr160247 transcription start site region 160247 1870 bp upstream
Tssr160248 transcription start site region 160248 1796 bp upstream
Tssr160249 transcription start site region 160249 1761 bp upstream
Tssr160250 transcription start site region 160250 1722 bp upstream
Tssr160251 transcription start site region 160251 1646 bp upstream
Tssr160252 transcription start site region 160252 1295 bp upstream
Tssr160253 transcription start site region 160253 1102 bp upstream
Tssr160254 transcription start site region 160254 1024 bp upstream
Tssr160255 transcription start site region 160255 985 bp upstream
Tssr160256 transcription start site region 160256 868 bp upstream
Tssr160257 transcription start site region 160257 813 bp upstream
Tssr160258 transcription start site region 160258 759 bp upstream
Tssr160259 transcription start site region 160259 725 bp upstream
Tssr160260 transcription start site region 160260 497 bp upstream
Tssr160261 transcription start site region 160261 465 bp upstream
Tssr160262 transcription start site region 160262 441 bp upstream
Tssr160263 transcription start site region 160263 414 bp upstream
Tssr160264 transcription start site region 160264 374 bp upstream
Tssr160265 transcription start site region 160265 339 bp upstream
Tssr160266 transcription start site region 160266 277 bp upstream
Tssr160267 transcription start site region 160267 255 bp upstream
Tssr160268 transcription start site region 160268 95 bp upstream
Tssr160269 transcription start site region 160269 24 bp upstream
Tssr160270 transcription start site region 160270 77 bp downstream
Tssr160271 transcription start site region 160271 127 bp downstream
Tssr160272 transcription start site region 160272 179 bp downstream
Tssr160273 transcription start site region 160273 206 bp downstream
Tssr160274 transcription start site region 160274 236 bp downstream
Tssr160275 transcription start site region 160275 308 bp downstream
Tssr160276 transcription start site region 160276 399 bp downstream
Tssr160277 transcription start site region 160277 428 bp downstream
Tssr160278 transcription start site region 160278 483 bp downstream
Tssr160279 transcription start site region 160279 503 bp downstream
Tssr160280 transcription start site region 160280 606 bp downstream
Tssr160281 transcription start site region 160281 889 bp downstream
Tssr160282 transcription start site region 160282 1645 bp downstream
Tssr160283 transcription start site region 160283 1708 bp downstream
Tssr160284 transcription start site region 160284 1778 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory