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rs33251102 SNP Detail
Summary
  • ID
    rs33251102
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    ChrMT:4159 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                          ACCCACGATC AACTGAAGCA GCAACAAAAT ACTTCGTCAC
    ACAAGCAACA GCCTCAATAA TTATCCTCCT GGCCATCGTA CTCAACTATA AACAACTAGG
    R
    ACATGAATAT TTCAACAACA AACAAACGGT CTTATCCTTA ACATAACATT AATAGCCCTA
    TCCATAAAAC TAGGCCTCGC CCCATTCCAC TTCTGATTAC                      
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
WSB/EiJ
ss46791030 NES10981356 PERLEGEN MM_PANEL2 f SNP A A A A A A G A A A A A A A
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
WSB/EiJ
rs33251102 SNP A A A A A A G A A A A A A A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss46791030 NES10981356 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: ChrMT:4159 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
mt-Co1 mitochondrially encoded cytochrome c oxidase I 1169 bp upstream
mt-Nd1 mitochondrially encoded NADH dehydrogenase 1 452 bp downstream
mt-Nd2 mitochondrially encoded NADH dehydrogenase 2 within coordinates
mt-Rnr2 mitochondrially encoded 16S rRNA 1484 bp downstream
mt-Rr998 mitochondrially encoded regulatory region 998 within coordinates
mt-Ta mitochondrially encoded tRNA alanine 859 bp downstream
mt-Tc mitochondrially encoded tRNA cysteine 1033 bp downstream
mt-Ti mitochondrially encoded tRNA isoleucine 385 bp downstream
mt-Tl1 mitochondrially encoded tRNA leucine 1 1409 bp downstream
mt-Tm mitochondrially encoded tRNA methionine 246 bp downstream
mt-Tn mitochondrially encoded tRNA asparagine 930 bp downstream
mt-Tq mitochondrially encoded tRNA glutamine 317 bp upstream
mt-Tw mitochondrially encoded tRNA tryptophan 791 bp upstream
mt-Ty mitochondrially encoded tRNA tyrosine 1101 bp downstream
Tssr160111 transcription start site region 160111 1997 bp downstream
Tssr160112 transcription start site region 160112 1981 bp downstream
Tssr160113 transcription start site region 160113 1948 bp downstream
Tssr160114 transcription start site region 160114 1900 bp downstream
Tssr160115 transcription start site region 160115 1868 bp downstream
Tssr160116 transcription start site region 160116 1826 bp downstream
Tssr160117 transcription start site region 160117 1803 bp downstream
Tssr160118 transcription start site region 160118 1779 bp downstream
Tssr160119 transcription start site region 160119 1757 bp downstream
Tssr160120 transcription start site region 160120 1731 bp downstream
Tssr160121 transcription start site region 160121 1398 bp downstream
Tssr160122 transcription start site region 160122 1295 bp downstream
Tssr160123 transcription start site region 160123 1100 bp downstream
Tssr160124 transcription start site region 160124 1084 bp downstream
Tssr160125 transcription start site region 160125 1037 bp downstream
Tssr160126 transcription start site region 160126 977 bp downstream
Tssr160127 transcription start site region 160127 769 bp downstream
Tssr160128 transcription start site region 160128 714 bp downstream
Tssr160129 transcription start site region 160129 233 bp downstream
Tssr160130 transcription start site region 160130 145 bp downstream
Tssr160131 transcription start site region 160131 69 bp upstream
Tssr160132 transcription start site region 160132 127 bp upstream
Tssr160133 transcription start site region 160133 245 bp upstream
Tssr160134 transcription start site region 160134 507 bp upstream
Tssr160135 transcription start site region 160135 591 bp upstream
Tssr160136 transcription start site region 160136 711 bp upstream
Tssr160137 transcription start site region 160137 856 bp upstream
Tssr160138 transcription start site region 160138 1160 bp upstream
Tssr160139 transcription start site region 160139 1199 bp upstream
Tssr160140 transcription start site region 160140 1241 bp upstream
Tssr160141 transcription start site region 160141 1563 bp upstream
Tssr160142 transcription start site region 160142 1597 bp upstream
Tssr160143 transcription start site region 160143 1644 bp upstream
Tssr160144 transcription start site region 160144 1658 bp upstream
Tssr160145 transcription start site region 160145 1676 bp upstream
Tssr160146 transcription start site region 160146 1734 bp upstream
Tssr160147 transcription start site region 160147 1836 bp upstream
Tssr160148 transcription start site region 160148 1878 bp upstream
Tssr160149 transcription start site region 160149 1986 bp upstream
Tssr160246 transcription start site region 160246 1977 bp upstream
Tssr160247 transcription start site region 160247 1879 bp upstream
Tssr160248 transcription start site region 160248 1805 bp upstream
Tssr160249 transcription start site region 160249 1770 bp upstream
Tssr160250 transcription start site region 160250 1731 bp upstream
Tssr160251 transcription start site region 160251 1655 bp upstream
Tssr160252 transcription start site region 160252 1304 bp upstream
Tssr160253 transcription start site region 160253 1111 bp upstream
Tssr160254 transcription start site region 160254 1033 bp upstream
Tssr160255 transcription start site region 160255 994 bp upstream
Tssr160256 transcription start site region 160256 877 bp upstream
Tssr160257 transcription start site region 160257 822 bp upstream
Tssr160258 transcription start site region 160258 768 bp upstream
Tssr160259 transcription start site region 160259 734 bp upstream
Tssr160260 transcription start site region 160260 506 bp upstream
Tssr160261 transcription start site region 160261 474 bp upstream
Tssr160262 transcription start site region 160262 450 bp upstream
Tssr160263 transcription start site region 160263 423 bp upstream
Tssr160264 transcription start site region 160264 383 bp upstream
Tssr160265 transcription start site region 160265 348 bp upstream
Tssr160266 transcription start site region 160266 286 bp upstream
Tssr160267 transcription start site region 160267 264 bp upstream
Tssr160268 transcription start site region 160268 104 bp upstream
Tssr160269 transcription start site region 160269 33 bp upstream
Tssr160270 transcription start site region 160270 68 bp downstream
Tssr160271 transcription start site region 160271 118 bp downstream
Tssr160272 transcription start site region 160272 170 bp downstream
Tssr160273 transcription start site region 160273 197 bp downstream
Tssr160274 transcription start site region 160274 227 bp downstream
Tssr160275 transcription start site region 160275 299 bp downstream
Tssr160276 transcription start site region 160276 390 bp downstream
Tssr160277 transcription start site region 160277 419 bp downstream
Tssr160278 transcription start site region 160278 474 bp downstream
Tssr160279 transcription start site region 160279 494 bp downstream
Tssr160280 transcription start site region 160280 597 bp downstream
Tssr160281 transcription start site region 160281 880 bp downstream
Tssr160282 transcription start site region 160282 1636 bp downstream
Tssr160283 transcription start site region 160283 1699 bp downstream
Tssr160284 transcription start site region 160284 1769 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/10/2024
MGI 6.24
The Jackson Laboratory