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rs33251936 SNP Detail
Summary
  • ID
    rs33251936
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    ChrMT:2786 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                          CAGAGCCAGG AAATTGCGTA AGACTTAAAA CCTTGTTCCC
AGAGGTTCAA ATCCTCTCCC TAATAGTGTT CTTTATTAAT ATCCTAACAC TCCTCGTCCC
Y
ATTCTAATCG CCATAGCCTT CCTAACATTA GTAGAACGCA AAATCTTAGG GTACATACAA
CTACGAAAAG GCCCTAACAT TGTTGGTCCA TACGGCATTT                      

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
WSB/EiJ
ss46790934 NES10981298 PERLEGEN MM_PANEL2 f SNP C C C C C C T C C C T C C C
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
WSB/EiJ
rs33251936 SNP C C C C C C T C C C T C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss46790934 NES10981298 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: ChrMT:2786 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
mt-Nd1 mitochondrially encoded NADH dehydrogenase 1 within coordinates
mt-Nd2 mitochondrially encoded NADH dehydrogenase 2 1128 bp upstream
mt-Rnr1 mitochondrially encoded 12S rRNA 1762 bp downstream
mt-Rnr2 mitochondrially encoded 16S rRNA 111 bp downstream
mt-Rr998 mitochondrially encoded regulatory region 998 within coordinates
mt-Ti mitochondrially encoded tRNA isoleucine 920 bp upstream
mt-Tl1 mitochondrially encoded tRNA leucine 1 36 bp downstream
mt-Tm mitochondrially encoded tRNA methionine 1059 bp upstream
mt-Tq mitochondrially encoded tRNA glutamine 986 bp downstream
mt-Tv mitochondrially encoded tRNA valine 1693 bp downstream
Tssr160109 transcription start site region 160109 1680 bp downstream
Tssr160110 transcription start site region 160110 643 bp downstream
Tssr160111 transcription start site region 160111 624 bp downstream
Tssr160112 transcription start site region 160112 608 bp downstream
Tssr160113 transcription start site region 160113 575 bp downstream
Tssr160114 transcription start site region 160114 527 bp downstream
Tssr160115 transcription start site region 160115 495 bp downstream
Tssr160116 transcription start site region 160116 453 bp downstream
Tssr160117 transcription start site region 160117 430 bp downstream
Tssr160118 transcription start site region 160118 406 bp downstream
Tssr160119 transcription start site region 160119 384 bp downstream
Tssr160120 transcription start site region 160120 358 bp downstream
Tssr160121 transcription start site region 160121 25 bp downstream
Tssr160122 transcription start site region 160122 67 bp upstream
Tssr160123 transcription start site region 160123 262 bp upstream
Tssr160124 transcription start site region 160124 278 bp upstream
Tssr160125 transcription start site region 160125 327 bp upstream
Tssr160126 transcription start site region 160126 385 bp upstream
Tssr160127 transcription start site region 160127 589 bp upstream
Tssr160128 transcription start site region 160128 648 bp upstream
Tssr160129 transcription start site region 160129 1120 bp upstream
Tssr160130 transcription start site region 160130 1219 bp upstream
Tssr160131 transcription start site region 160131 1442 bp upstream
Tssr160132 transcription start site region 160132 1500 bp upstream
Tssr160133 transcription start site region 160133 1618 bp upstream
Tssr160134 transcription start site region 160134 1880 bp upstream
Tssr160135 transcription start site region 160135 1964 bp upstream
Tssr160228 transcription start site region 160228 1998 bp upstream
Tssr160229 transcription start site region 160229 1940 bp upstream
Tssr160230 transcription start site region 160230 1932 bp upstream
Tssr160231 transcription start site region 160231 1902 bp upstream
Tssr160232 transcription start site region 160232 1543 bp upstream
Tssr160233 transcription start site region 160233 1520 bp upstream
Tssr160234 transcription start site region 160234 1487 bp upstream
Tssr160235 transcription start site region 160235 1438 bp upstream
Tssr160236 transcription start site region 160236 1363 bp upstream
Tssr160237 transcription start site region 160237 1331 bp upstream
Tssr160238 transcription start site region 160238 1280 bp upstream
Tssr160239 transcription start site region 160239 1242 bp upstream
Tssr160240 transcription start site region 160240 1167 bp upstream
Tssr160241 transcription start site region 160241 1133 bp upstream
Tssr160242 transcription start site region 160242 841 bp upstream
Tssr160243 transcription start site region 160243 777 bp upstream
Tssr160244 transcription start site region 160244 730 bp upstream
Tssr160245 transcription start site region 160245 677 bp upstream
Tssr160246 transcription start site region 160246 604 bp upstream
Tssr160247 transcription start site region 160247 506 bp upstream
Tssr160248 transcription start site region 160248 432 bp upstream
Tssr160249 transcription start site region 160249 397 bp upstream
Tssr160250 transcription start site region 160250 358 bp upstream
Tssr160251 transcription start site region 160251 282 bp upstream
Tssr160252 transcription start site region 160252 58 bp downstream
Tssr160253 transcription start site region 160253 235 bp downstream
Tssr160254 transcription start site region 160254 325 bp downstream
Tssr160255 transcription start site region 160255 367 bp downstream
Tssr160256 transcription start site region 160256 454 bp downstream
Tssr160257 transcription start site region 160257 521 bp downstream
Tssr160258 transcription start site region 160258 595 bp downstream
Tssr160259 transcription start site region 160259 612 bp downstream
Tssr160260 transcription start site region 160260 648 bp downstream
Tssr160261 transcription start site region 160261 876 bp downstream
Tssr160262 transcription start site region 160262 911 bp downstream
Tssr160263 transcription start site region 160263 926 bp downstream
Tssr160264 transcription start site region 160264 969 bp downstream
Tssr160265 transcription start site region 160265 1011 bp downstream
Tssr160266 transcription start site region 160266 1041 bp downstream
Tssr160267 transcription start site region 160267 1097 bp downstream
Tssr160268 transcription start site region 160268 1256 bp downstream
Tssr160269 transcription start site region 160269 1302 bp downstream
Tssr160270 transcription start site region 160270 1441 bp downstream
Tssr160271 transcription start site region 160271 1491 bp downstream
Tssr160272 transcription start site region 160272 1543 bp downstream
Tssr160273 transcription start site region 160273 1570 bp downstream
Tssr160274 transcription start site region 160274 1600 bp downstream
Tssr160275 transcription start site region 160275 1672 bp downstream
Tssr160276 transcription start site region 160276 1763 bp downstream
Tssr160277 transcription start site region 160277 1792 bp downstream
Tssr160278 transcription start site region 160278 1847 bp downstream
Tssr160279 transcription start site region 160279 1867 bp downstream
Tssr160280 transcription start site region 160280 1970 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory