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rs33251939 SNP Detail
Summary
  • ID
    rs33251939
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    ChrMT:2814 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                          AACCTTGTTC CCAGAGGTTC AAATCCTCTC CCTAATAGTG
TTCTTTATTA ATATCCTAAC ACTCCTCGTC CCCATTCTAA TCGCCATAGC CTTCCTAACA
Y
TAGTAGAACG CAAAATCTTA GGGTACATAC AACTACGAAA AGGCCCTAAC ATTGTTGGTC
CATACGGCAT TTTACAACCA TTTGCAGACG CCATAAAATT                      

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss46790937 NES10981300 PERLEGEN MM_PANEL2 f SNP T T T T T T C T T T C T T C T
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs33251939 SNP T T T T T T C T T T C T T C T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss46790937 NES10981300 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: ChrMT:2814 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
mt-Nd1 mitochondrially encoded NADH dehydrogenase 1 within coordinates
mt-Nd2 mitochondrially encoded NADH dehydrogenase 2 1100 bp upstream
mt-Rnr1 mitochondrially encoded 12S rRNA 1790 bp downstream
mt-Rnr2 mitochondrially encoded 16S rRNA 139 bp downstream
mt-Ti mitochondrially encoded tRNA isoleucine 892 bp upstream
mt-Tl1 mitochondrially encoded tRNA leucine 1 64 bp downstream
mt-Tm mitochondrially encoded tRNA methionine 1031 bp upstream
mt-Tq mitochondrially encoded tRNA glutamine 958 bp downstream
mt-Tv mitochondrially encoded tRNA valine 1721 bp downstream
Tssr160109 transcription start site region 160109 1708 bp downstream
Tssr160110 transcription start site region 160110 671 bp downstream
Tssr160111 transcription start site region 160111 652 bp downstream
Tssr160112 transcription start site region 160112 636 bp downstream
Tssr160113 transcription start site region 160113 603 bp downstream
Tssr160114 transcription start site region 160114 555 bp downstream
Tssr160115 transcription start site region 160115 523 bp downstream
Tssr160116 transcription start site region 160116 481 bp downstream
Tssr160117 transcription start site region 160117 458 bp downstream
Tssr160118 transcription start site region 160118 434 bp downstream
Tssr160119 transcription start site region 160119 412 bp downstream
Tssr160120 transcription start site region 160120 386 bp downstream
Tssr160121 transcription start site region 160121 53 bp downstream
Tssr160122 transcription start site region 160122 39 bp upstream
Tssr160123 transcription start site region 160123 234 bp upstream
Tssr160124 transcription start site region 160124 250 bp upstream
Tssr160125 transcription start site region 160125 299 bp upstream
Tssr160126 transcription start site region 160126 357 bp upstream
Tssr160127 transcription start site region 160127 561 bp upstream
Tssr160128 transcription start site region 160128 620 bp upstream
Tssr160129 transcription start site region 160129 1092 bp upstream
Tssr160130 transcription start site region 160130 1191 bp upstream
Tssr160131 transcription start site region 160131 1414 bp upstream
Tssr160132 transcription start site region 160132 1472 bp upstream
Tssr160133 transcription start site region 160133 1590 bp upstream
Tssr160134 transcription start site region 160134 1852 bp upstream
Tssr160135 transcription start site region 160135 1936 bp upstream
Tssr160229 transcription start site region 160229 1968 bp upstream
Tssr160230 transcription start site region 160230 1960 bp upstream
Tssr160231 transcription start site region 160231 1930 bp upstream
Tssr160232 transcription start site region 160232 1571 bp upstream
Tssr160233 transcription start site region 160233 1548 bp upstream
Tssr160234 transcription start site region 160234 1515 bp upstream
Tssr160235 transcription start site region 160235 1466 bp upstream
Tssr160236 transcription start site region 160236 1391 bp upstream
Tssr160237 transcription start site region 160237 1359 bp upstream
Tssr160238 transcription start site region 160238 1308 bp upstream
Tssr160239 transcription start site region 160239 1270 bp upstream
Tssr160240 transcription start site region 160240 1195 bp upstream
Tssr160241 transcription start site region 160241 1161 bp upstream
Tssr160242 transcription start site region 160242 869 bp upstream
Tssr160243 transcription start site region 160243 805 bp upstream
Tssr160244 transcription start site region 160244 758 bp upstream
Tssr160245 transcription start site region 160245 705 bp upstream
Tssr160246 transcription start site region 160246 632 bp upstream
Tssr160247 transcription start site region 160247 534 bp upstream
Tssr160248 transcription start site region 160248 460 bp upstream
Tssr160249 transcription start site region 160249 425 bp upstream
Tssr160250 transcription start site region 160250 386 bp upstream
Tssr160251 transcription start site region 160251 310 bp upstream
Tssr160252 transcription start site region 160252 30 bp downstream
Tssr160253 transcription start site region 160253 207 bp downstream
Tssr160254 transcription start site region 160254 297 bp downstream
Tssr160255 transcription start site region 160255 339 bp downstream
Tssr160256 transcription start site region 160256 426 bp downstream
Tssr160257 transcription start site region 160257 493 bp downstream
Tssr160258 transcription start site region 160258 567 bp downstream
Tssr160259 transcription start site region 160259 584 bp downstream
Tssr160260 transcription start site region 160260 620 bp downstream
Tssr160261 transcription start site region 160261 848 bp downstream
Tssr160262 transcription start site region 160262 883 bp downstream
Tssr160263 transcription start site region 160263 898 bp downstream
Tssr160264 transcription start site region 160264 941 bp downstream
Tssr160265 transcription start site region 160265 983 bp downstream
Tssr160266 transcription start site region 160266 1013 bp downstream
Tssr160267 transcription start site region 160267 1069 bp downstream
Tssr160268 transcription start site region 160268 1228 bp downstream
Tssr160269 transcription start site region 160269 1274 bp downstream
Tssr160270 transcription start site region 160270 1413 bp downstream
Tssr160271 transcription start site region 160271 1463 bp downstream
Tssr160272 transcription start site region 160272 1515 bp downstream
Tssr160273 transcription start site region 160273 1542 bp downstream
Tssr160274 transcription start site region 160274 1572 bp downstream
Tssr160275 transcription start site region 160275 1644 bp downstream
Tssr160276 transcription start site region 160276 1735 bp downstream
Tssr160277 transcription start site region 160277 1764 bp downstream
Tssr160278 transcription start site region 160278 1819 bp downstream
Tssr160279 transcription start site region 160279 1839 bp downstream
Tssr160280 transcription start site region 160280 1942 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory