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rs33251942 SNP Detail
Summary
  • ID
    rs33251942
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    ChrMT:2840 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                          TCTCCCTAAT AGTGTTCTTT ATTAATATCC TAACACTCCT
CGTCCCCATT CTAATCGCCA TAGCCTTCCT AACATTAGTA GAACGCAAAA TCTTAGGGTA
Y
ATACAACTAC GAAAAGGCCC TAACATTGTT GGTCCATACG GCATTTTACA ACCATTTGCA
GACGCCATAA AATTATTTAT AAAAGAACCA ATACGCCCTT                      

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
WSB/EiJ
ss46790940 NES10981302 PERLEGEN MM_PANEL2 f SNP C C C C C C T C C C T C C C
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
WSB/EiJ
rs33251942 SNP C C C C C C T C C C T C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss46790940 NES10981302 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: ChrMT:2840 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
mt-Nd1 mitochondrially encoded NADH dehydrogenase 1 within coordinates
mt-Nd2 mitochondrially encoded NADH dehydrogenase 2 1074 bp upstream
mt-Rnr1 mitochondrially encoded 12S rRNA 1816 bp downstream
mt-Rnr2 mitochondrially encoded 16S rRNA 165 bp downstream
mt-Rr998 mitochondrially encoded regulatory region 998 within coordinates
mt-Ti mitochondrially encoded tRNA isoleucine 866 bp upstream
mt-Tl1 mitochondrially encoded tRNA leucine 1 90 bp downstream
mt-Tm mitochondrially encoded tRNA methionine 1005 bp upstream
mt-Tq mitochondrially encoded tRNA glutamine 932 bp downstream
mt-Tv mitochondrially encoded tRNA valine 1747 bp downstream
Tssr160109 transcription start site region 160109 1734 bp downstream
Tssr160110 transcription start site region 160110 697 bp downstream
Tssr160111 transcription start site region 160111 678 bp downstream
Tssr160112 transcription start site region 160112 662 bp downstream
Tssr160113 transcription start site region 160113 629 bp downstream
Tssr160114 transcription start site region 160114 581 bp downstream
Tssr160115 transcription start site region 160115 549 bp downstream
Tssr160116 transcription start site region 160116 507 bp downstream
Tssr160117 transcription start site region 160117 484 bp downstream
Tssr160118 transcription start site region 160118 460 bp downstream
Tssr160119 transcription start site region 160119 438 bp downstream
Tssr160120 transcription start site region 160120 412 bp downstream
Tssr160121 transcription start site region 160121 79 bp downstream
Tssr160122 transcription start site region 160122 13 bp upstream
Tssr160123 transcription start site region 160123 208 bp upstream
Tssr160124 transcription start site region 160124 224 bp upstream
Tssr160125 transcription start site region 160125 273 bp upstream
Tssr160126 transcription start site region 160126 331 bp upstream
Tssr160127 transcription start site region 160127 535 bp upstream
Tssr160128 transcription start site region 160128 594 bp upstream
Tssr160129 transcription start site region 160129 1066 bp upstream
Tssr160130 transcription start site region 160130 1165 bp upstream
Tssr160131 transcription start site region 160131 1388 bp upstream
Tssr160132 transcription start site region 160132 1446 bp upstream
Tssr160133 transcription start site region 160133 1564 bp upstream
Tssr160134 transcription start site region 160134 1826 bp upstream
Tssr160135 transcription start site region 160135 1910 bp upstream
Tssr160229 transcription start site region 160229 1994 bp upstream
Tssr160230 transcription start site region 160230 1986 bp upstream
Tssr160231 transcription start site region 160231 1956 bp upstream
Tssr160232 transcription start site region 160232 1597 bp upstream
Tssr160233 transcription start site region 160233 1574 bp upstream
Tssr160234 transcription start site region 160234 1541 bp upstream
Tssr160235 transcription start site region 160235 1492 bp upstream
Tssr160236 transcription start site region 160236 1417 bp upstream
Tssr160237 transcription start site region 160237 1385 bp upstream
Tssr160238 transcription start site region 160238 1334 bp upstream
Tssr160239 transcription start site region 160239 1296 bp upstream
Tssr160240 transcription start site region 160240 1221 bp upstream
Tssr160241 transcription start site region 160241 1187 bp upstream
Tssr160242 transcription start site region 160242 895 bp upstream
Tssr160243 transcription start site region 160243 831 bp upstream
Tssr160244 transcription start site region 160244 784 bp upstream
Tssr160245 transcription start site region 160245 731 bp upstream
Tssr160246 transcription start site region 160246 658 bp upstream
Tssr160247 transcription start site region 160247 560 bp upstream
Tssr160248 transcription start site region 160248 486 bp upstream
Tssr160249 transcription start site region 160249 451 bp upstream
Tssr160250 transcription start site region 160250 412 bp upstream
Tssr160251 transcription start site region 160251 336 bp upstream
Tssr160252 transcription start site region 160252 4 bp downstream
Tssr160253 transcription start site region 160253 181 bp downstream
Tssr160254 transcription start site region 160254 271 bp downstream
Tssr160255 transcription start site region 160255 313 bp downstream
Tssr160256 transcription start site region 160256 400 bp downstream
Tssr160257 transcription start site region 160257 467 bp downstream
Tssr160258 transcription start site region 160258 541 bp downstream
Tssr160259 transcription start site region 160259 558 bp downstream
Tssr160260 transcription start site region 160260 594 bp downstream
Tssr160261 transcription start site region 160261 822 bp downstream
Tssr160262 transcription start site region 160262 857 bp downstream
Tssr160263 transcription start site region 160263 872 bp downstream
Tssr160264 transcription start site region 160264 915 bp downstream
Tssr160265 transcription start site region 160265 957 bp downstream
Tssr160266 transcription start site region 160266 987 bp downstream
Tssr160267 transcription start site region 160267 1043 bp downstream
Tssr160268 transcription start site region 160268 1202 bp downstream
Tssr160269 transcription start site region 160269 1248 bp downstream
Tssr160270 transcription start site region 160270 1387 bp downstream
Tssr160271 transcription start site region 160271 1437 bp downstream
Tssr160272 transcription start site region 160272 1489 bp downstream
Tssr160273 transcription start site region 160273 1516 bp downstream
Tssr160274 transcription start site region 160274 1546 bp downstream
Tssr160275 transcription start site region 160275 1618 bp downstream
Tssr160276 transcription start site region 160276 1709 bp downstream
Tssr160277 transcription start site region 160277 1738 bp downstream
Tssr160278 transcription start site region 160278 1793 bp downstream
Tssr160279 transcription start site region 160279 1813 bp downstream
Tssr160280 transcription start site region 160280 1916 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory