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rs33251965 SNP Detail
Summary
  • ID
    rs33251965
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    ChrMT:4189 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                          ACTTCGTCAC ACAAGCAACA GCCTCAATAA TTATCCTCCT
GGCCATCGTA CTCAACTATA AACAACTAGG AACATGAATA TTTCAACAAC AAACAAACGG
Y
CTTATCCTTA ACATAACATT AATAGCCCTA TCCATAAAAC TAGGCCTCGC CCCATTCCAC
TTCTGATTAC CAGAAGTAAC TCAAGGGATC CCACTGCACA                      

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
WSB/EiJ
ss46791033 NES10981358 PERLEGEN MM_PANEL2 f SNP T T T T T T C T T T C T T T
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
WSB/EiJ
rs33251965 SNP T T T T T T C T T T C T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss46791033 NES10981358 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: ChrMT:4189 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
mt-Co1 mitochondrially encoded cytochrome c oxidase I 1139 bp upstream
mt-Nd1 mitochondrially encoded NADH dehydrogenase 1 482 bp downstream
mt-Nd2 mitochondrially encoded NADH dehydrogenase 2 within coordinates
mt-Rnr2 mitochondrially encoded 16S rRNA 1514 bp downstream
mt-Rr998 mitochondrially encoded regulatory region 998 within coordinates
mt-Ta mitochondrially encoded tRNA alanine 829 bp downstream
mt-Tc mitochondrially encoded tRNA cysteine 1003 bp downstream
mt-Ti mitochondrially encoded tRNA isoleucine 415 bp downstream
mt-Tl1 mitochondrially encoded tRNA leucine 1 1439 bp downstream
mt-Tm mitochondrially encoded tRNA methionine 276 bp downstream
mt-Tn mitochondrially encoded tRNA asparagine 900 bp downstream
mt-Tq mitochondrially encoded tRNA glutamine 347 bp upstream
mt-Tw mitochondrially encoded tRNA tryptophan 761 bp upstream
mt-Ty mitochondrially encoded tRNA tyrosine 1071 bp downstream
Tssr160113 transcription start site region 160113 1978 bp downstream
Tssr160114 transcription start site region 160114 1930 bp downstream
Tssr160115 transcription start site region 160115 1898 bp downstream
Tssr160116 transcription start site region 160116 1856 bp downstream
Tssr160117 transcription start site region 160117 1833 bp downstream
Tssr160118 transcription start site region 160118 1809 bp downstream
Tssr160119 transcription start site region 160119 1787 bp downstream
Tssr160120 transcription start site region 160120 1761 bp downstream
Tssr160121 transcription start site region 160121 1428 bp downstream
Tssr160122 transcription start site region 160122 1325 bp downstream
Tssr160123 transcription start site region 160123 1130 bp downstream
Tssr160124 transcription start site region 160124 1114 bp downstream
Tssr160125 transcription start site region 160125 1067 bp downstream
Tssr160126 transcription start site region 160126 1007 bp downstream
Tssr160127 transcription start site region 160127 799 bp downstream
Tssr160128 transcription start site region 160128 744 bp downstream
Tssr160129 transcription start site region 160129 263 bp downstream
Tssr160130 transcription start site region 160130 175 bp downstream
Tssr160131 transcription start site region 160131 39 bp upstream
Tssr160132 transcription start site region 160132 97 bp upstream
Tssr160133 transcription start site region 160133 215 bp upstream
Tssr160134 transcription start site region 160134 477 bp upstream
Tssr160135 transcription start site region 160135 561 bp upstream
Tssr160136 transcription start site region 160136 681 bp upstream
Tssr160137 transcription start site region 160137 826 bp upstream
Tssr160138 transcription start site region 160138 1130 bp upstream
Tssr160139 transcription start site region 160139 1169 bp upstream
Tssr160140 transcription start site region 160140 1211 bp upstream
Tssr160141 transcription start site region 160141 1533 bp upstream
Tssr160142 transcription start site region 160142 1567 bp upstream
Tssr160143 transcription start site region 160143 1614 bp upstream
Tssr160144 transcription start site region 160144 1628 bp upstream
Tssr160145 transcription start site region 160145 1646 bp upstream
Tssr160146 transcription start site region 160146 1704 bp upstream
Tssr160147 transcription start site region 160147 1806 bp upstream
Tssr160148 transcription start site region 160148 1848 bp upstream
Tssr160149 transcription start site region 160149 1956 bp upstream
Tssr160150 transcription start site region 160150 1991 bp upstream
Tssr160247 transcription start site region 160247 1909 bp upstream
Tssr160248 transcription start site region 160248 1835 bp upstream
Tssr160249 transcription start site region 160249 1800 bp upstream
Tssr160250 transcription start site region 160250 1761 bp upstream
Tssr160251 transcription start site region 160251 1685 bp upstream
Tssr160252 transcription start site region 160252 1334 bp upstream
Tssr160253 transcription start site region 160253 1141 bp upstream
Tssr160254 transcription start site region 160254 1063 bp upstream
Tssr160255 transcription start site region 160255 1024 bp upstream
Tssr160256 transcription start site region 160256 907 bp upstream
Tssr160257 transcription start site region 160257 852 bp upstream
Tssr160258 transcription start site region 160258 798 bp upstream
Tssr160259 transcription start site region 160259 764 bp upstream
Tssr160260 transcription start site region 160260 536 bp upstream
Tssr160261 transcription start site region 160261 504 bp upstream
Tssr160262 transcription start site region 160262 480 bp upstream
Tssr160263 transcription start site region 160263 453 bp upstream
Tssr160264 transcription start site region 160264 413 bp upstream
Tssr160265 transcription start site region 160265 378 bp upstream
Tssr160266 transcription start site region 160266 316 bp upstream
Tssr160267 transcription start site region 160267 294 bp upstream
Tssr160268 transcription start site region 160268 134 bp upstream
Tssr160269 transcription start site region 160269 63 bp upstream
Tssr160270 transcription start site region 160270 38 bp downstream
Tssr160271 transcription start site region 160271 88 bp downstream
Tssr160272 transcription start site region 160272 140 bp downstream
Tssr160273 transcription start site region 160273 167 bp downstream
Tssr160274 transcription start site region 160274 197 bp downstream
Tssr160275 transcription start site region 160275 269 bp downstream
Tssr160276 transcription start site region 160276 360 bp downstream
Tssr160277 transcription start site region 160277 389 bp downstream
Tssr160278 transcription start site region 160278 444 bp downstream
Tssr160279 transcription start site region 160279 464 bp downstream
Tssr160280 transcription start site region 160280 567 bp downstream
Tssr160281 transcription start site region 160281 850 bp downstream
Tssr160282 transcription start site region 160282 1606 bp downstream
Tssr160283 transcription start site region 160283 1669 bp downstream
Tssr160284 transcription start site region 160284 1739 bp downstream
Tssr160285 transcription start site region 160285 1992 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory