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rs33251968 SNP Detail
Summary
  • ID
    rs33251968
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    ChrMT:4297 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                          TTAACATAAC ATTAATAGCC CTATCCATAA AACTAGGCCT
CGCCCCATTC CACTTCTGAT TACCAGAAGT AACTCAAGGG ATCCCACTGC ACATAGGACT
Y
ATTCTTCTTA CATGACAAAA AATTGCTCCC CTATCAATTT TAATTCAAAT TTACCCGCTA
CTCAACTCTA CTATCATTTT AATACTAGCA ATTACTTCTA                      

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss46791036 NES10981361 PERLEGEN MM_PANEL2 f SNP T T T T T T C T T T T T T T T
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs33251968 SNP T T T T T T C T T T T T T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss46791036 NES10981361 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: ChrMT:4297 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
mt-Co1 mitochondrially encoded cytochrome c oxidase I 1031 bp upstream
mt-Nd1 mitochondrially encoded NADH dehydrogenase 1 590 bp downstream
mt-Nd2 mitochondrially encoded NADH dehydrogenase 2 within coordinates
mt-Rnr2 mitochondrially encoded 16S rRNA 1622 bp downstream
mt-Rr998 mitochondrially encoded regulatory region 998 within coordinates
mt-Ta mitochondrially encoded tRNA alanine 721 bp downstream
mt-Tc mitochondrially encoded tRNA cysteine 895 bp downstream
mt-Ti mitochondrially encoded tRNA isoleucine 523 bp downstream
mt-Tl1 mitochondrially encoded tRNA leucine 1 1547 bp downstream
mt-Tm mitochondrially encoded tRNA methionine 384 bp downstream
mt-Tn mitochondrially encoded tRNA asparagine 792 bp downstream
mt-Tq mitochondrially encoded tRNA glutamine 455 bp upstream
mt-Tw mitochondrially encoded tRNA tryptophan 653 bp upstream
mt-Ty mitochondrially encoded tRNA tyrosine 963 bp downstream
Tssr160116 transcription start site region 160116 1964 bp downstream
Tssr160117 transcription start site region 160117 1941 bp downstream
Tssr160118 transcription start site region 160118 1917 bp downstream
Tssr160119 transcription start site region 160119 1895 bp downstream
Tssr160120 transcription start site region 160120 1869 bp downstream
Tssr160121 transcription start site region 160121 1536 bp downstream
Tssr160122 transcription start site region 160122 1433 bp downstream
Tssr160123 transcription start site region 160123 1238 bp downstream
Tssr160124 transcription start site region 160124 1222 bp downstream
Tssr160125 transcription start site region 160125 1175 bp downstream
Tssr160126 transcription start site region 160126 1115 bp downstream
Tssr160127 transcription start site region 160127 907 bp downstream
Tssr160128 transcription start site region 160128 852 bp downstream
Tssr160129 transcription start site region 160129 371 bp downstream
Tssr160130 transcription start site region 160130 283 bp downstream
Tssr160131 transcription start site region 160131 58 bp downstream
Tssr160132 transcription start site region 160132 within coordinates
Tssr160133 transcription start site region 160133 107 bp upstream
Tssr160134 transcription start site region 160134 369 bp upstream
Tssr160135 transcription start site region 160135 453 bp upstream
Tssr160136 transcription start site region 160136 573 bp upstream
Tssr160137 transcription start site region 160137 718 bp upstream
Tssr160138 transcription start site region 160138 1022 bp upstream
Tssr160139 transcription start site region 160139 1061 bp upstream
Tssr160140 transcription start site region 160140 1103 bp upstream
Tssr160141 transcription start site region 160141 1425 bp upstream
Tssr160142 transcription start site region 160142 1459 bp upstream
Tssr160143 transcription start site region 160143 1506 bp upstream
Tssr160144 transcription start site region 160144 1520 bp upstream
Tssr160145 transcription start site region 160145 1538 bp upstream
Tssr160146 transcription start site region 160146 1596 bp upstream
Tssr160147 transcription start site region 160147 1698 bp upstream
Tssr160148 transcription start site region 160148 1740 bp upstream
Tssr160149 transcription start site region 160149 1848 bp upstream
Tssr160150 transcription start site region 160150 1883 bp upstream
Tssr160151 transcription start site region 160151 1903 bp upstream
Tssr160152 transcription start site region 160152 1942 bp upstream
Tssr160248 transcription start site region 160248 1943 bp upstream
Tssr160249 transcription start site region 160249 1908 bp upstream
Tssr160250 transcription start site region 160250 1869 bp upstream
Tssr160251 transcription start site region 160251 1793 bp upstream
Tssr160252 transcription start site region 160252 1442 bp upstream
Tssr160253 transcription start site region 160253 1249 bp upstream
Tssr160254 transcription start site region 160254 1171 bp upstream
Tssr160255 transcription start site region 160255 1132 bp upstream
Tssr160256 transcription start site region 160256 1015 bp upstream
Tssr160257 transcription start site region 160257 960 bp upstream
Tssr160258 transcription start site region 160258 906 bp upstream
Tssr160259 transcription start site region 160259 872 bp upstream
Tssr160260 transcription start site region 160260 644 bp upstream
Tssr160261 transcription start site region 160261 612 bp upstream
Tssr160262 transcription start site region 160262 588 bp upstream
Tssr160263 transcription start site region 160263 561 bp upstream
Tssr160264 transcription start site region 160264 521 bp upstream
Tssr160265 transcription start site region 160265 486 bp upstream
Tssr160266 transcription start site region 160266 424 bp upstream
Tssr160267 transcription start site region 160267 402 bp upstream
Tssr160268 transcription start site region 160268 242 bp upstream
Tssr160269 transcription start site region 160269 171 bp upstream
Tssr160270 transcription start site region 160270 53 bp upstream
Tssr160271 transcription start site region 160271 within coordinates
Tssr160272 transcription start site region 160272 32 bp downstream
Tssr160273 transcription start site region 160273 59 bp downstream
Tssr160274 transcription start site region 160274 89 bp downstream
Tssr160275 transcription start site region 160275 161 bp downstream
Tssr160276 transcription start site region 160276 252 bp downstream
Tssr160277 transcription start site region 160277 281 bp downstream
Tssr160278 transcription start site region 160278 336 bp downstream
Tssr160279 transcription start site region 160279 356 bp downstream
Tssr160280 transcription start site region 160280 459 bp downstream
Tssr160281 transcription start site region 160281 742 bp downstream
Tssr160282 transcription start site region 160282 1498 bp downstream
Tssr160283 transcription start site region 160283 1561 bp downstream
Tssr160284 transcription start site region 160284 1631 bp downstream
Tssr160285 transcription start site region 160285 1884 bp downstream
Tssr160286 transcription start site region 160286 1926 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory