rs33251977 SNP Detail

Summary

• ID
  rs33251977
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:85264635 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAGG CCCTTTCTCG AACCTTTCTG
  W
  GCTCTTCCTT CACAGCTCTA TGCCA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39512875	mCV25199247	ABI	CRAMUS_MOUSE	f	SNP	T	A	A
ss146148989	ENSMUSSNP6090068	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		A
ss325484632	CHEV_17_85356547	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33251977					SNP	T	A	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:85264635 () rs orientation: forward

Symbol	Name	Function Class
1110020A21Rik	RIKEN cDNA 1110020A21 gene	within coordinates
Cpgi9575	CpG island 9575	within coordinates
Cpgi9576	CpG island 9576	443 bp proximal
Ppm1b	protein phosphatase 1B, magnesium dependent, beta isoform	within coordinates
Rr405500	regulatory region 405500	188 bp upstream
Rr532186	regulatory region 532186	456 bp distal
Rr532187	regulatory region 532187	within coordinates
Rr532188	regulatory region 532188	206 bp proximal
Rr532189	regulatory region 532189	1180 bp proximal
Tssr5218	transcription start site region 5218	262 bp upstream
Tssr146069	transcription start site region 146069	462 bp downstream
Tssr146070	transcription start site region 146070	69 bp downstream
Tssr146071	transcription start site region 146071	786 bp upstream
Tssr149699	transcription start site region 149699	1280 bp downstream
Tssr149700	transcription start site region 149700	1299 bp downstream
Tssr149701	transcription start site region 149701	1329 bp downstream