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rs33252665 SNP Detail
Summary
  • ID
    rs33252665
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    ChrMT:2918 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                          TAGAACGCAA AATCTTAGGG TACATACAAC TACGAAAAGG
CCCTAACATT GTTGGTCCAT ACGGCATTTT ACAACCATTT GCAGACGCCA TAAAATTATT
Y
ATAAAAGAAC CAATACGCCC TTTAACAACC TCTATATCCT TATTTATTAT TGCACCTACC
CTATCACTCA CACTAGCATT AAGTCTATGA GTTCCCCTAC                      

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss46790943 NES10981303 PERLEGEN MM_PANEL2 f SNP T T T T T T C T T T T T T T T
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs33252665 SNP T T T T T T C T T T T T T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss46790943 NES10981303 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: ChrMT:2918 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
mt-Nd1 mitochondrially encoded NADH dehydrogenase 1 within coordinates
mt-Nd2 mitochondrially encoded NADH dehydrogenase 2 996 bp upstream
mt-Rnr1 mitochondrially encoded 12S rRNA 1894 bp downstream
mt-Rnr2 mitochondrially encoded 16S rRNA 243 bp downstream
mt-Rr998 mitochondrially encoded regulatory region 998 within coordinates
mt-Ti mitochondrially encoded tRNA isoleucine 788 bp upstream
mt-Tl1 mitochondrially encoded tRNA leucine 1 168 bp downstream
mt-Tm mitochondrially encoded tRNA methionine 927 bp upstream
mt-Tq mitochondrially encoded tRNA glutamine 854 bp downstream
mt-Tv mitochondrially encoded tRNA valine 1825 bp downstream
Tssr160109 transcription start site region 160109 1812 bp downstream
Tssr160110 transcription start site region 160110 775 bp downstream
Tssr160111 transcription start site region 160111 756 bp downstream
Tssr160112 transcription start site region 160112 740 bp downstream
Tssr160113 transcription start site region 160113 707 bp downstream
Tssr160114 transcription start site region 160114 659 bp downstream
Tssr160115 transcription start site region 160115 627 bp downstream
Tssr160116 transcription start site region 160116 585 bp downstream
Tssr160117 transcription start site region 160117 562 bp downstream
Tssr160118 transcription start site region 160118 538 bp downstream
Tssr160119 transcription start site region 160119 516 bp downstream
Tssr160120 transcription start site region 160120 490 bp downstream
Tssr160121 transcription start site region 160121 157 bp downstream
Tssr160122 transcription start site region 160122 54 bp downstream
Tssr160123 transcription start site region 160123 130 bp upstream
Tssr160124 transcription start site region 160124 146 bp upstream
Tssr160125 transcription start site region 160125 195 bp upstream
Tssr160126 transcription start site region 160126 253 bp upstream
Tssr160127 transcription start site region 160127 457 bp upstream
Tssr160128 transcription start site region 160128 516 bp upstream
Tssr160129 transcription start site region 160129 988 bp upstream
Tssr160130 transcription start site region 160130 1087 bp upstream
Tssr160131 transcription start site region 160131 1310 bp upstream
Tssr160132 transcription start site region 160132 1368 bp upstream
Tssr160133 transcription start site region 160133 1486 bp upstream
Tssr160134 transcription start site region 160134 1748 bp upstream
Tssr160135 transcription start site region 160135 1832 bp upstream
Tssr160136 transcription start site region 160136 1952 bp upstream
Tssr160232 transcription start site region 160232 1675 bp upstream
Tssr160233 transcription start site region 160233 1652 bp upstream
Tssr160234 transcription start site region 160234 1619 bp upstream
Tssr160235 transcription start site region 160235 1570 bp upstream
Tssr160236 transcription start site region 160236 1495 bp upstream
Tssr160237 transcription start site region 160237 1463 bp upstream
Tssr160238 transcription start site region 160238 1412 bp upstream
Tssr160239 transcription start site region 160239 1374 bp upstream
Tssr160240 transcription start site region 160240 1299 bp upstream
Tssr160241 transcription start site region 160241 1265 bp upstream
Tssr160242 transcription start site region 160242 973 bp upstream
Tssr160243 transcription start site region 160243 909 bp upstream
Tssr160244 transcription start site region 160244 862 bp upstream
Tssr160245 transcription start site region 160245 809 bp upstream
Tssr160246 transcription start site region 160246 736 bp upstream
Tssr160247 transcription start site region 160247 638 bp upstream
Tssr160248 transcription start site region 160248 564 bp upstream
Tssr160249 transcription start site region 160249 529 bp upstream
Tssr160250 transcription start site region 160250 490 bp upstream
Tssr160251 transcription start site region 160251 414 bp upstream
Tssr160252 transcription start site region 160252 63 bp upstream
Tssr160253 transcription start site region 160253 103 bp downstream
Tssr160254 transcription start site region 160254 193 bp downstream
Tssr160255 transcription start site region 160255 235 bp downstream
Tssr160256 transcription start site region 160256 322 bp downstream
Tssr160257 transcription start site region 160257 389 bp downstream
Tssr160258 transcription start site region 160258 463 bp downstream
Tssr160259 transcription start site region 160259 480 bp downstream
Tssr160260 transcription start site region 160260 516 bp downstream
Tssr160261 transcription start site region 160261 744 bp downstream
Tssr160262 transcription start site region 160262 779 bp downstream
Tssr160263 transcription start site region 160263 794 bp downstream
Tssr160264 transcription start site region 160264 837 bp downstream
Tssr160265 transcription start site region 160265 879 bp downstream
Tssr160266 transcription start site region 160266 909 bp downstream
Tssr160267 transcription start site region 160267 965 bp downstream
Tssr160268 transcription start site region 160268 1124 bp downstream
Tssr160269 transcription start site region 160269 1170 bp downstream
Tssr160270 transcription start site region 160270 1309 bp downstream
Tssr160271 transcription start site region 160271 1359 bp downstream
Tssr160272 transcription start site region 160272 1411 bp downstream
Tssr160273 transcription start site region 160273 1438 bp downstream
Tssr160274 transcription start site region 160274 1468 bp downstream
Tssr160275 transcription start site region 160275 1540 bp downstream
Tssr160276 transcription start site region 160276 1631 bp downstream
Tssr160277 transcription start site region 160277 1660 bp downstream
Tssr160278 transcription start site region 160278 1715 bp downstream
Tssr160279 transcription start site region 160279 1735 bp downstream
Tssr160280 transcription start site region 160280 1838 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory