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rs33252668 SNP Detail
Summary
  • ID
    rs33252668
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    ChrMT:2954 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                          AAGGCCCTAA CATTGTTGGT CCATACGGCA TTTTACAACC
ATTTGCAGAC GCCATAAAAT TATTTATAAA AGAACCAATA CGCCCTTTAA CAACCTCTAT
R
TCCTTATTTA TTATTGCACC TACCCTATCA CTCACACTAG CATTAAGTCT ATGAGTTCCC
CTACCAATAC CACACCCATT AATTAATTTA AACCTAGGGA                      

R = A/G

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
WSB/EiJ
ss46790946 NES10981306 PERLEGEN MM_PANEL2 f SNP A A A A A A G A A A A A A A
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
WSB/EiJ
rs33252668 SNP A A A A A A G A A A A A A A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss46790946 NES10981306 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: ChrMT:2954 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
mt-Nd1 mitochondrially encoded NADH dehydrogenase 1 within coordinates
mt-Nd2 mitochondrially encoded NADH dehydrogenase 2 960 bp upstream
mt-Rnr1 mitochondrially encoded 12S rRNA 1930 bp downstream
mt-Rnr2 mitochondrially encoded 16S rRNA 279 bp downstream
mt-Rr998 mitochondrially encoded regulatory region 998 within coordinates
mt-Ti mitochondrially encoded tRNA isoleucine 752 bp upstream
mt-Tl1 mitochondrially encoded tRNA leucine 1 204 bp downstream
mt-Tm mitochondrially encoded tRNA methionine 891 bp upstream
mt-Tq mitochondrially encoded tRNA glutamine 818 bp downstream
mt-Tv mitochondrially encoded tRNA valine 1861 bp downstream
mt-Tw mitochondrially encoded tRNA tryptophan 1996 bp upstream
Tssr160109 transcription start site region 160109 1848 bp downstream
Tssr160110 transcription start site region 160110 811 bp downstream
Tssr160111 transcription start site region 160111 792 bp downstream
Tssr160112 transcription start site region 160112 776 bp downstream
Tssr160113 transcription start site region 160113 743 bp downstream
Tssr160114 transcription start site region 160114 695 bp downstream
Tssr160115 transcription start site region 160115 663 bp downstream
Tssr160116 transcription start site region 160116 621 bp downstream
Tssr160117 transcription start site region 160117 598 bp downstream
Tssr160118 transcription start site region 160118 574 bp downstream
Tssr160119 transcription start site region 160119 552 bp downstream
Tssr160120 transcription start site region 160120 526 bp downstream
Tssr160121 transcription start site region 160121 193 bp downstream
Tssr160122 transcription start site region 160122 90 bp downstream
Tssr160123 transcription start site region 160123 94 bp upstream
Tssr160124 transcription start site region 160124 110 bp upstream
Tssr160125 transcription start site region 160125 159 bp upstream
Tssr160126 transcription start site region 160126 217 bp upstream
Tssr160127 transcription start site region 160127 421 bp upstream
Tssr160128 transcription start site region 160128 480 bp upstream
Tssr160129 transcription start site region 160129 952 bp upstream
Tssr160130 transcription start site region 160130 1051 bp upstream
Tssr160131 transcription start site region 160131 1274 bp upstream
Tssr160132 transcription start site region 160132 1332 bp upstream
Tssr160133 transcription start site region 160133 1450 bp upstream
Tssr160134 transcription start site region 160134 1712 bp upstream
Tssr160135 transcription start site region 160135 1796 bp upstream
Tssr160136 transcription start site region 160136 1916 bp upstream
Tssr160232 transcription start site region 160232 1711 bp upstream
Tssr160233 transcription start site region 160233 1688 bp upstream
Tssr160234 transcription start site region 160234 1655 bp upstream
Tssr160235 transcription start site region 160235 1606 bp upstream
Tssr160236 transcription start site region 160236 1531 bp upstream
Tssr160237 transcription start site region 160237 1499 bp upstream
Tssr160238 transcription start site region 160238 1448 bp upstream
Tssr160239 transcription start site region 160239 1410 bp upstream
Tssr160240 transcription start site region 160240 1335 bp upstream
Tssr160241 transcription start site region 160241 1301 bp upstream
Tssr160242 transcription start site region 160242 1009 bp upstream
Tssr160243 transcription start site region 160243 945 bp upstream
Tssr160244 transcription start site region 160244 898 bp upstream
Tssr160245 transcription start site region 160245 845 bp upstream
Tssr160246 transcription start site region 160246 772 bp upstream
Tssr160247 transcription start site region 160247 674 bp upstream
Tssr160248 transcription start site region 160248 600 bp upstream
Tssr160249 transcription start site region 160249 565 bp upstream
Tssr160250 transcription start site region 160250 526 bp upstream
Tssr160251 transcription start site region 160251 450 bp upstream
Tssr160252 transcription start site region 160252 99 bp upstream
Tssr160253 transcription start site region 160253 67 bp downstream
Tssr160254 transcription start site region 160254 157 bp downstream
Tssr160255 transcription start site region 160255 199 bp downstream
Tssr160256 transcription start site region 160256 286 bp downstream
Tssr160257 transcription start site region 160257 353 bp downstream
Tssr160258 transcription start site region 160258 427 bp downstream
Tssr160259 transcription start site region 160259 444 bp downstream
Tssr160260 transcription start site region 160260 480 bp downstream
Tssr160261 transcription start site region 160261 708 bp downstream
Tssr160262 transcription start site region 160262 743 bp downstream
Tssr160263 transcription start site region 160263 758 bp downstream
Tssr160264 transcription start site region 160264 801 bp downstream
Tssr160265 transcription start site region 160265 843 bp downstream
Tssr160266 transcription start site region 160266 873 bp downstream
Tssr160267 transcription start site region 160267 929 bp downstream
Tssr160268 transcription start site region 160268 1088 bp downstream
Tssr160269 transcription start site region 160269 1134 bp downstream
Tssr160270 transcription start site region 160270 1273 bp downstream
Tssr160271 transcription start site region 160271 1323 bp downstream
Tssr160272 transcription start site region 160272 1375 bp downstream
Tssr160273 transcription start site region 160273 1402 bp downstream
Tssr160274 transcription start site region 160274 1432 bp downstream
Tssr160275 transcription start site region 160275 1504 bp downstream
Tssr160276 transcription start site region 160276 1595 bp downstream
Tssr160277 transcription start site region 160277 1624 bp downstream
Tssr160278 transcription start site region 160278 1679 bp downstream
Tssr160279 transcription start site region 160279 1699 bp downstream
Tssr160280 transcription start site region 160280 1802 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory