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rs33252671 SNP Detail
Summary
  • ID
    rs33252671
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    ChrMT:3077 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                          CCCTATCACT CACACTAGCA TTAAGTCTAT GAGTTCCCCT
ACCAATACCA CACCCATTAA TTAATTTAAA CCTAGGGATT TTATTTATTT TAGCAACATC
Y
AGCCTATCAG TTTACTCCAT TCTATGATCA GGATGAGCCT CAAACTCCAA ATACTCACTA
TTCGGAGCTT TACGAGCCGT AGCCCAAACA ATTTCATATG                      

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss46790949 NES10981309 PERLEGEN MM_PANEL2 f SNP T T T T T T C T T C T T C T
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs33252671 SNP T T T T T T C T T C T T C T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss46790949 NES10981309 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: ChrMT:3077 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
mt-Nd1 mitochondrially encoded NADH dehydrogenase 1 within coordinates
mt-Nd2 mitochondrially encoded NADH dehydrogenase 2 837 bp upstream
mt-Rnr2 mitochondrially encoded 16S rRNA 402 bp downstream
mt-Rr998 mitochondrially encoded regulatory region 998 within coordinates
mt-Ta mitochondrially encoded tRNA alanine 1941 bp downstream
mt-Ti mitochondrially encoded tRNA isoleucine 629 bp upstream
mt-Tl1 mitochondrially encoded tRNA leucine 1 327 bp downstream
mt-Tm mitochondrially encoded tRNA methionine 768 bp upstream
mt-Tq mitochondrially encoded tRNA glutamine 695 bp downstream
mt-Tv mitochondrially encoded tRNA valine 1984 bp downstream
mt-Tw mitochondrially encoded tRNA tryptophan 1873 bp upstream
Tssr160109 transcription start site region 160109 1971 bp downstream
Tssr160110 transcription start site region 160110 934 bp downstream
Tssr160111 transcription start site region 160111 915 bp downstream
Tssr160112 transcription start site region 160112 899 bp downstream
Tssr160113 transcription start site region 160113 866 bp downstream
Tssr160114 transcription start site region 160114 818 bp downstream
Tssr160115 transcription start site region 160115 786 bp downstream
Tssr160116 transcription start site region 160116 744 bp downstream
Tssr160117 transcription start site region 160117 721 bp downstream
Tssr160118 transcription start site region 160118 697 bp downstream
Tssr160119 transcription start site region 160119 675 bp downstream
Tssr160120 transcription start site region 160120 649 bp downstream
Tssr160121 transcription start site region 160121 316 bp downstream
Tssr160122 transcription start site region 160122 213 bp downstream
Tssr160123 transcription start site region 160123 18 bp downstream
Tssr160124 transcription start site region 160124 2 bp downstream
Tssr160125 transcription start site region 160125 36 bp upstream
Tssr160126 transcription start site region 160126 94 bp upstream
Tssr160127 transcription start site region 160127 298 bp upstream
Tssr160128 transcription start site region 160128 357 bp upstream
Tssr160129 transcription start site region 160129 829 bp upstream
Tssr160130 transcription start site region 160130 928 bp upstream
Tssr160131 transcription start site region 160131 1151 bp upstream
Tssr160132 transcription start site region 160132 1209 bp upstream
Tssr160133 transcription start site region 160133 1327 bp upstream
Tssr160134 transcription start site region 160134 1589 bp upstream
Tssr160135 transcription start site region 160135 1673 bp upstream
Tssr160136 transcription start site region 160136 1793 bp upstream
Tssr160137 transcription start site region 160137 1938 bp upstream
Tssr160232 transcription start site region 160232 1834 bp upstream
Tssr160233 transcription start site region 160233 1811 bp upstream
Tssr160234 transcription start site region 160234 1778 bp upstream
Tssr160235 transcription start site region 160235 1729 bp upstream
Tssr160236 transcription start site region 160236 1654 bp upstream
Tssr160237 transcription start site region 160237 1622 bp upstream
Tssr160238 transcription start site region 160238 1571 bp upstream
Tssr160239 transcription start site region 160239 1533 bp upstream
Tssr160240 transcription start site region 160240 1458 bp upstream
Tssr160241 transcription start site region 160241 1424 bp upstream
Tssr160242 transcription start site region 160242 1132 bp upstream
Tssr160243 transcription start site region 160243 1068 bp upstream
Tssr160244 transcription start site region 160244 1021 bp upstream
Tssr160245 transcription start site region 160245 968 bp upstream
Tssr160246 transcription start site region 160246 895 bp upstream
Tssr160247 transcription start site region 160247 797 bp upstream
Tssr160248 transcription start site region 160248 723 bp upstream
Tssr160249 transcription start site region 160249 688 bp upstream
Tssr160250 transcription start site region 160250 649 bp upstream
Tssr160251 transcription start site region 160251 573 bp upstream
Tssr160252 transcription start site region 160252 222 bp upstream
Tssr160253 transcription start site region 160253 29 bp upstream
Tssr160254 transcription start site region 160254 34 bp downstream
Tssr160255 transcription start site region 160255 76 bp downstream
Tssr160256 transcription start site region 160256 163 bp downstream
Tssr160257 transcription start site region 160257 230 bp downstream
Tssr160258 transcription start site region 160258 304 bp downstream
Tssr160259 transcription start site region 160259 321 bp downstream
Tssr160260 transcription start site region 160260 357 bp downstream
Tssr160261 transcription start site region 160261 585 bp downstream
Tssr160262 transcription start site region 160262 620 bp downstream
Tssr160263 transcription start site region 160263 635 bp downstream
Tssr160264 transcription start site region 160264 678 bp downstream
Tssr160265 transcription start site region 160265 720 bp downstream
Tssr160266 transcription start site region 160266 750 bp downstream
Tssr160267 transcription start site region 160267 806 bp downstream
Tssr160268 transcription start site region 160268 965 bp downstream
Tssr160269 transcription start site region 160269 1011 bp downstream
Tssr160270 transcription start site region 160270 1150 bp downstream
Tssr160271 transcription start site region 160271 1200 bp downstream
Tssr160272 transcription start site region 160272 1252 bp downstream
Tssr160273 transcription start site region 160273 1279 bp downstream
Tssr160274 transcription start site region 160274 1309 bp downstream
Tssr160275 transcription start site region 160275 1381 bp downstream
Tssr160276 transcription start site region 160276 1472 bp downstream
Tssr160277 transcription start site region 160277 1501 bp downstream
Tssr160278 transcription start site region 160278 1556 bp downstream
Tssr160279 transcription start site region 160279 1576 bp downstream
Tssr160280 transcription start site region 160280 1679 bp downstream
Tssr160281 transcription start site region 160281 1962 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory