rs33252757 SNP Detail

Summary

• ID
  rs33252757
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:47036544 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCTAGTGG GGGCCCCTAG
  TGCTCAGGAG GAGAGGCAGG GCTGGCAGCT AGGGGCTTGG CAGCCTGTGA CCTGTGCGGA
  GACACTAGTT CTGGAGTAGA AAATAAAGTG TATACTGCCT CCTACTGGTC TTGTGAGAGG
  TTGCGGTGCA AAAGGCAAGG TTATGGGAGG CTGAGGTCTT GAGGGGGGAT TGGGGGGGGG
  R
  ACACCATAAA AACACGTTAC TTCTGAAGAA ACACCAGGCA CAGGCTTGGA GAATGCAGAC
  TGTATTGTTT ACTCCGTTTG CCCGACCCCC ACATCTGCAC CCAAATGCAA TATCTGCATT
  AGGGGATGGT CTTAGGGTAG GGGCCATTGC CTGAGCATGG GCTTCTGGGA GCCGGAGAAA
  CTCAGTCTGT CTTCTTGAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C57BL/6J	DBA/2J
ss39513533	mCV25217953	ABI	CRAMUS_MOUSE	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C57BL/6J	DBA/2J
rs33252757					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:47036544 () rs orientation: forward

Symbol	Name	Function Class
Gnmt	glycine N-methyltransferase	46 bp downstream
Pex6	peroxisomal biogenesis factor 6	75 bp downstream
Rr331605	regulatory region 331605	within coordinates
Rr331606	regulatory region 331606	1857 bp proximal
Tssr148377	transcription start site region 148377	696 bp downstream
Tssr148378	transcription start site region 148378	709 bp downstream
Tssr148379	transcription start site region 148379	726 bp downstream
Tssr148380	transcription start site region 148380	1091 bp downstream
Tssr148381	transcription start site region 148381	1738 bp downstream