rs33252934 SNP Detail

Summary

• ID
  rs33252934
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:31404417 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  ACAAGGACCT ATCAACAACT TGAAGAAGGT GACATCAGAG CAACTCCAGA GTCAGATCAG
  CCTGTCAGCC TTGAAGTCAA GGATGAGGCC GTGAACCCAG GAGTGTGGGA GCAAAGGTAA
  AGGGACAACA GCTGTCACCG TCCCCAGAGA CAACTGAGGA GCCAGCCTAC AGCACTAGTG
  ACCCCTGAGG CTGGAAGGTA ACAAACAAAG TGGGCATTGA ATCCTGGAGT TTGAGAGGCT
  GAGGCAGGAG GCTTGTGGTG AGGTTCATGC GGTCAGCCTG GGCTGCAGTG AGAGCCTGCA
  Y
  GAACACGTCT CCAAAGGCGA ACCCTGAGCT TCTCTCATGG GTTGACTATA ACCTCCTTCT
  TATTTGCCTG CCTGCAACCA AGACACGTGA TCTTGCTTGG AGCAGAAGCT GCTAAAGTAT
  GGATCACGTA CCATGTGGAG GCTGGGTTAC CTTGCATTTA GGGCAGGCTC TAGATCTGAC
  AACTGATGCC ATGGGGCCAG GGGTCAAGGG ACTAAGATGA TGGATCAACC TGGAATGTGG
  TAGGTTGGAT ACCCAGAGCT CACATTAGGG AAAAAAAAAA CAAAACAAAT AAACAGAAAA
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C57BL/6J	DBA/2J
ss39512715	mCV24387646	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss145457855	ENSMUSSNP6641263	ENSEMBL	ENSEMBL_Sanger	f	SNP			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C57BL/6J	DBA/2J
rs33252934					SNP	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss144591508	ENSMUSSNP913238	ENSEMBL	ENSEMBL_Sanger	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:31404417 () rs orientation: forward

Symbol	Name	Function Class
Rr525395	regulatory region 525395	1896 bp proximal
Tmprss3	transmembrane protease, serine 3	within coordinates
Tssr5079	transcription start site region 5079	778 bp downstream
Tssr5080	transcription start site region 5080	1177 bp downstream